Commit Graph

449 Commits

Author SHA1 Message Date
01ef4bdedd Added support for identifiers sorting, and selection 2007-08-22 13:41:04 +00:00
ffe1ce6319 Fixed queries 2007-08-22 13:40:33 +00:00
6ba8c6eb67 ups 2007-08-21 10:31:09 +00:00
e06eeb6d17 ups 2007-08-21 10:25:23 +00:00
26ab6c3fe7 Added a "decimals" parameter to write_ftsv, so that datasets can be written
without full precision. Defaults to 7 digits after decimal point.
2007-08-16 10:02:54 +00:00
a6af506ae0 The reduced Uma X, for use in Lpls 2007-08-16 09:46:33 +00:00
fc91d17bdc The Uma affy, nci60 + drug data + tissue type 2007-08-16 09:17:07 +00:00
d510e092e3 Added SAM and conditioned enrichment analysis 2007-08-14 16:16:31 +00:00
8d4848d5fa Added explained variance 2007-08-14 16:12:28 +00:00
004cfe0a9f Quick fix for gray on NaNs 2007-08-14 16:10:35 +00:00
13b35180ee Fixed bug in DAG plot color mapping. 2007-08-08 12:24:14 +00:00
e08dba0924 read_ftsv and write_ftsv now supports filenames as well as file descriptors. 2007-08-08 12:23:45 +00:00
04126e9c83 New information content datasets. 2007-08-08 10:13:05 +00:00
46c2a0c149 New calculations (Z), based on updated X data 2007-08-07 11:45:16 +00:00
916fc4c046 Added scaling to navigator menu, moved transformations to a separate sub menu 2007-08-07 11:42:07 +00:00
168384f266 Cleaned esvd routine, added subfunc scale 2007-08-07 11:41:03 +00:00
d055a1f882 Some ..... 2007-08-07 11:39:16 +00:00
4b80baf225 Added information content drag'n'drop to z loadings plot. 2007-08-06 16:20:39 +00:00
72e300c95e Addded automatic bin selection in histogram plot 2007-08-04 10:37:22 +00:00
3f7215bc35 Factored out a mixin class for IC thresholding. 2007-08-03 12:09:17 +00:00
0523ebab05 Added dataset transpose option 2007-08-03 09:44:31 +00:00
e62a6ae9b3 Removed print statements 2007-08-02 14:51:53 +00:00
0758ab8bfb Fixed histogram plot to accept selections of one, and made ad-hoc choice of proportional color to patches 2007-08-02 14:37:19 +00:00
7a0e2481eb Full corrected X data 2007-08-02 11:22:05 +00:00
94f4b276b9 Fixed selection in DAG-plot to work both with and without IC set. 2007-08-02 11:20:30 +00:00
b334e94b15 New and corrected smokers data 2007-08-02 11:19:47 +00:00
438e7cb918 Irrelevant play 2007-08-02 11:19:16 +00:00
2d419a9862 Added GO-category enrichment analysis 2007-08-02 11:18:48 +00:00
973470b595 stuff 2007-08-02 11:18:18 +00:00
da5b977042 Moved less important datasets into a subfolder named "secondary". 2007-08-02 10:52:58 +00:00
83d76eac4f Fixed vorrect namespace for scipy funcs 2007-08-02 10:44:06 +00:00
b233e4abc6 Added spin buttons for minimum and maximum information content in DAG plot. 2007-08-02 10:20:33 +00:00
dc3893eecc Fixed a "main.project" bug 2007-08-02 10:19:16 +00:00
f12fe23c1b Fixed docstrings. 2007-08-02 10:08:52 +00:00
4c24061575 Fixed docstrings. 2007-08-02 10:08:27 +00:00
63d6347f37 Fixed makefile to not use lots of space on inherited function documentation. 2007-08-02 10:04:06 +00:00
6e4db7ebe4 Fixed plot focus signal problem. 2007-07-31 12:25:56 +00:00
10eba079bc iii 2007-07-30 18:04:42 +00:00
aa4007e208 Improved drag'n'drop of data into scatter plots so that it no longer requires
matching identifiers along dimensions.
2007-07-30 17:42:48 +00:00
0bc4a6e3f0 Fixed drag'n'drop of datasets to DAG-plots to convert inf/-inf to
maximum/minimum values of the dataset.
2007-07-30 14:15:23 +00:00
e84a202fbe Commented out unused functions. 2007-07-30 10:51:58 +00:00
50a6dae3f6 added full lpls data 2007-07-30 10:21:09 +00:00
b39e71ca2b Trying to fix cv_pls 2007-07-30 09:46:43 +00:00
9ccdf97d07 Changed filenames of information content datasets. 2007-07-30 07:55:36 +00:00
1e18ac81de Added names to datasets. 2007-07-30 07:54:22 +00:00
349cab3c51 ups 2007-07-28 16:05:11 +00:00
9a2e259209 c 2007-07-28 09:19:42 +00:00
df88f44255 clean up
ups
2007-07-28 09:18:48 +00:00
5cf34fc03f Added information content datasets.
They are in files named ICs<subgraph><number> where 
those numbered 0 uses all ECs while 5 uses only the safest ones.
2007-07-27 17:22:10 +00:00
4b8f594966 app -> main.application 2007-07-27 09:40:58 +00:00