Commit Graph

465 Commits

Author SHA1 Message Date
c26999e688 Added line plot of matrices. 2007-11-08 11:47:36 +00:00
7ee7f0cf7e Added scatter plotting from dataset in navigator. 2007-11-07 12:44:22 +00:00
aef2e1daf0 Tralala ... 2007-11-07 12:34:13 +00:00
ca51a0b382 Added mat2ftsv to naïvely convert matlab matrices to ftsv files. Works in at
least one case, but does not try to guess anything sensible for identifiers.
2007-10-31 17:43:02 +00:00
b114d5aeec New crossval index generator 2007-09-25 06:31:40 +00:00
18f33decc7 Finnished the l-pls fdr 2007-09-21 13:16:40 +00:00
6698ebe932 Removed actiavtion in dimcontroller
opt. of compare func
2007-09-20 16:12:58 +00:00
41f93c5989 .... 2007-09-20 16:11:37 +00:00
7e9a0882f1 Updates 2007-09-20 16:10:40 +00:00
d9e5398865 GO (id, description, definition, ontology) 2007-08-28 09:39:24 +00:00
16ed2fd9c9 u 2007-08-24 11:48:29 +00:00
dc43830752 HS-entrez annotations 2007-08-24 09:15:16 +00:00
7dbf28f65d ... just lots of stuff 2007-08-24 09:14:24 +00:00
21b63b17e5 Fixed axis bug in barplot 2007-08-24 09:13:34 +00:00
7538710144 Enabled tree lines and set sensitivity on transforms 2007-08-24 09:12:52 +00:00
fa4604dbe5 load dataset defaults to datadir 2007-08-22 14:05:51 +00:00
01ef4bdedd Added support for identifiers sorting, and selection 2007-08-22 13:41:04 +00:00
ffe1ce6319 Fixed queries 2007-08-22 13:40:33 +00:00
6ba8c6eb67 ups 2007-08-21 10:31:09 +00:00
e06eeb6d17 ups 2007-08-21 10:25:23 +00:00
26ab6c3fe7 Added a "decimals" parameter to write_ftsv, so that datasets can be written
without full precision. Defaults to 7 digits after decimal point.
2007-08-16 10:02:54 +00:00
a6af506ae0 The reduced Uma X, for use in Lpls 2007-08-16 09:46:33 +00:00
fc91d17bdc The Uma affy, nci60 + drug data + tissue type 2007-08-16 09:17:07 +00:00
d510e092e3 Added SAM and conditioned enrichment analysis 2007-08-14 16:16:31 +00:00
8d4848d5fa Added explained variance 2007-08-14 16:12:28 +00:00
004cfe0a9f Quick fix for gray on NaNs 2007-08-14 16:10:35 +00:00
13b35180ee Fixed bug in DAG plot color mapping. 2007-08-08 12:24:14 +00:00
e08dba0924 read_ftsv and write_ftsv now supports filenames as well as file descriptors. 2007-08-08 12:23:45 +00:00
04126e9c83 New information content datasets. 2007-08-08 10:13:05 +00:00
46c2a0c149 New calculations (Z), based on updated X data 2007-08-07 11:45:16 +00:00
916fc4c046 Added scaling to navigator menu, moved transformations to a separate sub menu 2007-08-07 11:42:07 +00:00
168384f266 Cleaned esvd routine, added subfunc scale 2007-08-07 11:41:03 +00:00
d055a1f882 Some ..... 2007-08-07 11:39:16 +00:00
4b80baf225 Added information content drag'n'drop to z loadings plot. 2007-08-06 16:20:39 +00:00
72e300c95e Addded automatic bin selection in histogram plot 2007-08-04 10:37:22 +00:00
3f7215bc35 Factored out a mixin class for IC thresholding. 2007-08-03 12:09:17 +00:00
0523ebab05 Added dataset transpose option 2007-08-03 09:44:31 +00:00
e62a6ae9b3 Removed print statements 2007-08-02 14:51:53 +00:00
0758ab8bfb Fixed histogram plot to accept selections of one, and made ad-hoc choice of proportional color to patches 2007-08-02 14:37:19 +00:00
7a0e2481eb Full corrected X data 2007-08-02 11:22:05 +00:00
94f4b276b9 Fixed selection in DAG-plot to work both with and without IC set. 2007-08-02 11:20:30 +00:00
b334e94b15 New and corrected smokers data 2007-08-02 11:19:47 +00:00
438e7cb918 Irrelevant play 2007-08-02 11:19:16 +00:00
2d419a9862 Added GO-category enrichment analysis 2007-08-02 11:18:48 +00:00
973470b595 stuff 2007-08-02 11:18:18 +00:00
da5b977042 Moved less important datasets into a subfolder named "secondary". 2007-08-02 10:52:58 +00:00
83d76eac4f Fixed vorrect namespace for scipy funcs 2007-08-02 10:44:06 +00:00
b233e4abc6 Added spin buttons for minimum and maximum information content in DAG plot. 2007-08-02 10:20:33 +00:00
dc3893eecc Fixed a "main.project" bug 2007-08-02 10:19:16 +00:00
f12fe23c1b Fixed docstrings. 2007-08-02 10:08:52 +00:00