05cf63e694
Removes rpy, forcing scipy to be used.
2007-12-12 14:41:27 +00:00
455b2a7a86
Small fixes to setup.py and rules.
2007-12-11 19:49:36 +00:00
1798279a32
Files to debianize the program.
2007-12-11 18:26:47 +00:00
6379acca58
Added setup.py to do installation.
2007-12-11 18:25:08 +00:00
cef882b0a4
* Annotations are no longer cluttered as if they all belong to the same
...
dimension. There was a bug that actually gave the same annotation dictionary
to all dictionary annotation handlers.
* The selection window now remembers which annotation was shown for each
dimension.
2007-12-11 13:47:29 +00:00
c862c8bb04
Added function to specify a specific workflow based on module name.
2007-12-11 11:40:27 +00:00
9242b88d07
Removed buttons that do not belong on the toolbar: "New", "Load", "Save".
...
Load and save are currently not implemented anyway, but they do not represent
frequently used actions anyway.
2007-12-11 10:13:31 +00:00
90c84b768a
Changed help URLs.
2007-12-11 01:11:13 +00:00
057e2a9f1d
About to change the way logging is normally called.
2007-12-11 01:02:47 +00:00
d0a7b1cbc2
Code cleanup.
2007-12-11 00:13:26 +00:00
055c0ea4ac
Dataset dimensions are shown in statusbar.
2007-12-10 21:08:09 +00:00
1a4d73f26b
Fixed the function menu. It now works, is placed before "Help", and the method
...
for running a function is moved to the workflow module instead of being hidden the
WorkflowView.
2007-12-10 16:57:38 +00:00
82dacc3dd1
Added menu items to toggle visibility of workflow, navigator and infopane.
2007-12-06 00:20:42 +00:00
27d935319c
Added a delete function to the context menu on navigator elements.
2007-11-09 15:02:32 +00:00
c26999e688
Added line plot of matrices.
2007-11-08 11:47:36 +00:00
7ee7f0cf7e
Added scatter plotting from dataset in navigator.
2007-11-07 12:44:22 +00:00
aef2e1daf0
Tralala ...
2007-11-07 12:34:13 +00:00
ca51a0b382
Added mat2ftsv to naïvely convert matlab matrices to ftsv files. Works in at
...
least one case, but does not try to guess anything sensible for identifiers.
2007-10-31 17:43:02 +00:00
b114d5aeec
New crossval index generator
2007-09-25 06:31:40 +00:00
18f33decc7
Finnished the l-pls fdr
2007-09-21 13:16:40 +00:00
6698ebe932
Removed actiavtion in dimcontroller
...
opt. of compare func
2007-09-20 16:12:58 +00:00
41f93c5989
....
2007-09-20 16:11:37 +00:00
7e9a0882f1
Updates
2007-09-20 16:10:40 +00:00
d9e5398865
GO (id, description, definition, ontology)
2007-08-28 09:39:24 +00:00
16ed2fd9c9
u
2007-08-24 11:48:29 +00:00
dc43830752
HS-entrez annotations
2007-08-24 09:15:16 +00:00
7dbf28f65d
... just lots of stuff
2007-08-24 09:14:24 +00:00
21b63b17e5
Fixed axis bug in barplot
2007-08-24 09:13:34 +00:00
7538710144
Enabled tree lines and set sensitivity on transforms
2007-08-24 09:12:52 +00:00
fa4604dbe5
load dataset defaults to datadir
2007-08-22 14:05:51 +00:00
01ef4bdedd
Added support for identifiers sorting, and selection
2007-08-22 13:41:04 +00:00
ffe1ce6319
Fixed queries
2007-08-22 13:40:33 +00:00
6ba8c6eb67
ups
2007-08-21 10:31:09 +00:00
e06eeb6d17
ups
2007-08-21 10:25:23 +00:00
26ab6c3fe7
Added a "decimals" parameter to write_ftsv, so that datasets can be written
...
without full precision. Defaults to 7 digits after decimal point.
2007-08-16 10:02:54 +00:00
a6af506ae0
The reduced Uma X, for use in Lpls
2007-08-16 09:46:33 +00:00
fc91d17bdc
The Uma affy, nci60 + drug data + tissue type
2007-08-16 09:17:07 +00:00
d510e092e3
Added SAM and conditioned enrichment analysis
2007-08-14 16:16:31 +00:00
8d4848d5fa
Added explained variance
2007-08-14 16:12:28 +00:00
004cfe0a9f
Quick fix for gray on NaNs
2007-08-14 16:10:35 +00:00
13b35180ee
Fixed bug in DAG plot color mapping.
2007-08-08 12:24:14 +00:00
e08dba0924
read_ftsv and write_ftsv now supports filenames as well as file descriptors.
2007-08-08 12:23:45 +00:00
04126e9c83
New information content datasets.
2007-08-08 10:13:05 +00:00
46c2a0c149
New calculations (Z), based on updated X data
2007-08-07 11:45:16 +00:00
916fc4c046
Added scaling to navigator menu, moved transformations to a separate sub menu
2007-08-07 11:42:07 +00:00
168384f266
Cleaned esvd routine, added subfunc scale
2007-08-07 11:41:03 +00:00
d055a1f882
Some .....
2007-08-07 11:39:16 +00:00
4b80baf225
Added information content drag'n'drop to z loadings plot.
2007-08-06 16:20:39 +00:00
72e300c95e
Addded automatic bin selection in histogram plot
2007-08-04 10:37:22 +00:00
3f7215bc35
Factored out a mixin class for IC thresholding.
2007-08-03 12:09:17 +00:00
