Einar Ryeng
05cf63e694
Removes rpy, forcing scipy to be used.
2007-12-12 14:41:27 +00:00
Einar Ryeng
455b2a7a86
Small fixes to setup.py and rules.
2007-12-11 19:49:36 +00:00
Einar Ryeng
1798279a32
Files to debianize the program.
2007-12-11 18:26:47 +00:00
Einar Ryeng
6379acca58
Added setup.py to do installation.
2007-12-11 18:25:08 +00:00
Einar Ryeng
cef882b0a4
* Annotations are no longer cluttered as if they all belong to the same
...
dimension. There was a bug that actually gave the same annotation dictionary
to all dictionary annotation handlers.
* The selection window now remembers which annotation was shown for each
dimension.
2007-12-11 13:47:29 +00:00
Einar Ryeng
c862c8bb04
Added function to specify a specific workflow based on module name.
2007-12-11 11:40:27 +00:00
Einar Ryeng
9242b88d07
Removed buttons that do not belong on the toolbar: "New", "Load", "Save".
...
Load and save are currently not implemented anyway, but they do not represent
frequently used actions anyway.
2007-12-11 10:13:31 +00:00
Einar Ryeng
90c84b768a
Changed help URLs.
2007-12-11 01:11:13 +00:00
Einar Ryeng
057e2a9f1d
About to change the way logging is normally called.
2007-12-11 01:02:47 +00:00
Einar Ryeng
d0a7b1cbc2
Code cleanup.
2007-12-11 00:13:26 +00:00
Einar Ryeng
055c0ea4ac
Dataset dimensions are shown in statusbar.
2007-12-10 21:08:09 +00:00
Einar Ryeng
1a4d73f26b
Fixed the function menu. It now works, is placed before "Help", and the method
...
for running a function is moved to the workflow module instead of being hidden the
WorkflowView.
2007-12-10 16:57:38 +00:00
Einar Ryeng
82dacc3dd1
Added menu items to toggle visibility of workflow, navigator and infopane.
2007-12-06 00:20:42 +00:00
Einar Ryeng
27d935319c
Added a delete function to the context menu on navigator elements.
2007-11-09 15:02:32 +00:00
Einar Ryeng
c26999e688
Added line plot of matrices.
2007-11-08 11:47:36 +00:00
Einar Ryeng
7ee7f0cf7e
Added scatter plotting from dataset in navigator.
2007-11-07 12:44:22 +00:00
Arnar Flatberg
aef2e1daf0
Tralala ...
2007-11-07 12:34:13 +00:00
Einar Ryeng
ca51a0b382
Added mat2ftsv to naïvely convert matlab matrices to ftsv files. Works in at
...
least one case, but does not try to guess anything sensible for identifiers.
2007-10-31 17:43:02 +00:00
Arnar Flatberg
b114d5aeec
New crossval index generator
2007-09-25 06:31:40 +00:00
Arnar Flatberg
18f33decc7
Finnished the l-pls fdr
2007-09-21 13:16:40 +00:00
Arnar Flatberg
6698ebe932
Removed actiavtion in dimcontroller
...
opt. of compare func
2007-09-20 16:12:58 +00:00
Arnar Flatberg
41f93c5989
....
2007-09-20 16:11:37 +00:00
Arnar Flatberg
7e9a0882f1
Updates
2007-09-20 16:10:40 +00:00
Arnar Flatberg
d9e5398865
GO (id, description, definition, ontology)
2007-08-28 09:39:24 +00:00
Arnar Flatberg
16ed2fd9c9
u
2007-08-24 11:48:29 +00:00
Arnar Flatberg
dc43830752
HS-entrez annotations
2007-08-24 09:15:16 +00:00
Arnar Flatberg
7dbf28f65d
... just lots of stuff
2007-08-24 09:14:24 +00:00
Arnar Flatberg
21b63b17e5
Fixed axis bug in barplot
2007-08-24 09:13:34 +00:00
Arnar Flatberg
7538710144
Enabled tree lines and set sensitivity on transforms
2007-08-24 09:12:52 +00:00
Arnar Flatberg
fa4604dbe5
load dataset defaults to datadir
2007-08-22 14:05:51 +00:00
Arnar Flatberg
01ef4bdedd
Added support for identifiers sorting, and selection
2007-08-22 13:41:04 +00:00
Arnar Flatberg
ffe1ce6319
Fixed queries
2007-08-22 13:40:33 +00:00
Arnar Flatberg
6ba8c6eb67
ups
2007-08-21 10:31:09 +00:00
Arnar Flatberg
e06eeb6d17
ups
2007-08-21 10:25:23 +00:00
Einar Ryeng
26ab6c3fe7
Added a "decimals" parameter to write_ftsv, so that datasets can be written
...
without full precision. Defaults to 7 digits after decimal point.
2007-08-16 10:02:54 +00:00
Arnar Flatberg
a6af506ae0
The reduced Uma X, for use in Lpls
2007-08-16 09:46:33 +00:00
Arnar Flatberg
fc91d17bdc
The Uma affy, nci60 + drug data + tissue type
2007-08-16 09:17:07 +00:00
Arnar Flatberg
d510e092e3
Added SAM and conditioned enrichment analysis
2007-08-14 16:16:31 +00:00
Arnar Flatberg
8d4848d5fa
Added explained variance
2007-08-14 16:12:28 +00:00
Arnar Flatberg
004cfe0a9f
Quick fix for gray on NaNs
2007-08-14 16:10:35 +00:00
Einar Ryeng
13b35180ee
Fixed bug in DAG plot color mapping.
2007-08-08 12:24:14 +00:00
Einar Ryeng
e08dba0924
read_ftsv and write_ftsv now supports filenames as well as file descriptors.
2007-08-08 12:23:45 +00:00
Einar Ryeng
04126e9c83
New information content datasets.
2007-08-08 10:13:05 +00:00
Arnar Flatberg
46c2a0c149
New calculations (Z), based on updated X data
2007-08-07 11:45:16 +00:00
Arnar Flatberg
916fc4c046
Added scaling to navigator menu, moved transformations to a separate sub menu
2007-08-07 11:42:07 +00:00
Arnar Flatberg
168384f266
Cleaned esvd routine, added subfunc scale
2007-08-07 11:41:03 +00:00
Arnar Flatberg
d055a1f882
Some .....
2007-08-07 11:39:16 +00:00
Einar Ryeng
4b80baf225
Added information content drag'n'drop to z loadings plot.
2007-08-06 16:20:39 +00:00
Arnar Flatberg
72e300c95e
Addded automatic bin selection in histogram plot
2007-08-04 10:37:22 +00:00
Einar Ryeng
3f7215bc35
Factored out a mixin class for IC thresholding.
2007-08-03 12:09:17 +00:00
Einar Ryeng
Arnar Flatberg