Commit Graph

32 Commits

Author SHA1 Message Date
f29d48e879 Laydi project directory for testing the new project structure. 2011-01-12 16:57:10 +00:00
5f1f4d0dc2 Renamed directory illumina2ftsv to illumina to gather all Illumina-relevant
scripts there.  Added laydi-annot-illumina script that generates Laydi
annotation files from Illumina text annotation files.
2011-01-04 11:43:24 +00:00
f001d12584 Working version. 2010-09-27 19:45:56 +00:00
3d68d27a56 Begun writing illumina data to ftsv converter. 2010-09-24 15:18:52 +00:00
7e6bac20e1 FIXING STUFF!
Rename should be complete or almost so.
2008-12-05 22:07:56 +00:00
cb6d6b87cc Whatnot 2008-02-08 14:58:46 +00:00
f83a16ec37 Added new script. 2008-01-21 11:15:54 +00:00
aef2e1daf0 Tralala ... 2007-11-07 12:34:13 +00:00
7e9a0882f1 Updates 2007-09-20 16:10:40 +00:00
6ba8c6eb67 ups 2007-08-21 10:31:09 +00:00
e06eeb6d17 ups 2007-08-21 10:25:23 +00:00
438e7cb918 Irrelevant play 2007-08-02 11:19:16 +00:00
349cab3c51 ups 2007-07-28 16:05:11 +00:00
91abf12f51 sd 2007-07-24 14:34:47 +00:00
1d517d0754 Changed hardcoded absolute path to relative path. 2007-07-24 13:00:29 +00:00
05274b4f0b confidence 2007-07-23 18:07:10 +00:00
155dfada5c iups 2007-07-23 13:25:34 +00:00
9db5991108 2007-07-20 15:48:59 +00:00
98f53d3448 updates 2007-07-20 12:32:54 +00:00
7ee7aa968a Initial import 2007-07-20 09:36:26 +00:00
c7bfefe358 Fixed resnik distances. 2007-05-15 18:16:07 +00:00
335efe231a go-gene-matrix takes a GO vs. GO distance matrix and a gene-go-mapping file
and makes a gene vs. go distance matrix based on the shortest distances found
between each gene and go term.
2007-05-15 18:15:51 +00:00
f1301be67a go-distance update. 2007-04-26 18:54:34 +00:00
fefaffb2e3 go-distance seems to be able to calculate resnik now. Not asserted with
calculations by hand.
2007-04-04 19:08:50 +00:00
28f0f53e8a go-distance script soon calculating resnik distances. 2007-04-03 13:08:48 +00:00
a5c3a1f154 A couple of extra lines of code in a script. 2007-03-27 13:02:22 +00:00
728c334e8a ontology distance script now accumulates annotations correctly. 2007-03-26 23:15:14 +00:00
11eb3306b9 Works a bit better. 2007-03-26 17:18:26 +00:00
947cf8385f Annotations on yeast from Stanford mdb. 2007-03-23 20:51:04 +00:00
0904a59310 Gene ontolgy distance script in C. Will hopefully speed up calculations when
finished.
2007-03-23 13:25:07 +00:00
3dc1867be4 Added entrez-go-mapping that maps entrez IDs to GO terms based on a file of the form:
affy_id ::: geneid_1 /// geneid_2 ::: go(bp) ::: go(cc) ::: go(mf)
2007-03-15 23:47:24 +00:00
6fe4ff3c59 Added scripts folder for small but useful scripts. 2007-03-15 12:46:41 +00:00