Begun writing illumina data to ftsv converter.

scripts/illumina2ftsv/illumina2ftsv

@@ -0,0 +1,45 @@
+#!/usr/bin/python
+
+import getopt
+import sys
+
+from laydi import dataset
+
+def parse_options():
+    s_opts = ""
+    l_opts = []
+
+    options, params = getopt.getopt(sys.argv[1:], s_opts, l_opts)
+
+    return params
+
+def read_illumina_file(fn):
+    fd = open(fn)
+    line = fd.readline()
+    if line != "Illumina Inc. GenomeStudio version 1.7.0":
+        raise Exception("File cannot be recognized as Illumina textual data")
+
+    headers = {}
+    line= fd.readline()
+    while line.strip() != "":
+        key, val = line.split("=", 1)
+        headers[key.strip()] = val.strip()
+        line = fd.readline()
+    
+    col_headers = fd.readline().split('\t')
+    
+    values = []
+    line = fd.readline()
+    while line != "":
+        values.append[x.strip() for x in line.split('\t')
+
+    probe_col = col_headers.find("ProbeID")
+   
+
+
+
+if __name__ == '__main__':
+    fn = params[0]
+    read_illumina_file(fn)
+
+