168384f266
Cleaned esvd routine, added subfunc scale
2007-08-07 11:41:03 +00:00
d055a1f882
Some .....
2007-08-07 11:39:16 +00:00
4b80baf225
Added information content drag'n'drop to z loadings plot.
2007-08-06 16:20:39 +00:00
72e300c95e
Addded automatic bin selection in histogram plot
2007-08-04 10:37:22 +00:00
0523ebab05
Added dataset transpose option
2007-08-03 09:44:31 +00:00
e62a6ae9b3
Removed print statements
2007-08-02 14:51:53 +00:00
0758ab8bfb
Fixed histogram plot to accept selections of one, and made ad-hoc choice of proportional color to patches
2007-08-02 14:37:19 +00:00
973470b595
stuff
2007-08-02 11:18:18 +00:00
83d76eac4f
Fixed vorrect namespace for scipy funcs
2007-08-02 10:44:06 +00:00
dc3893eecc
Fixed a "main.project" bug
2007-08-02 10:19:16 +00:00
f12fe23c1b
Fixed docstrings.
2007-08-02 10:08:52 +00:00
4c24061575
Fixed docstrings.
2007-08-02 10:08:27 +00:00
6e4db7ebe4
Fixed plot focus signal problem.
2007-07-31 12:25:56 +00:00
10eba079bc
iii
2007-07-30 18:04:42 +00:00
aa4007e208
Improved drag'n'drop of data into scatter plots so that it no longer requires
...
matching identifiers along dimensions.
2007-07-30 17:42:48 +00:00
b39e71ca2b
Trying to fix cv_pls
2007-07-30 09:46:43 +00:00
349cab3c51
ups
2007-07-28 16:05:11 +00:00
9a2e259209
c
2007-07-28 09:19:42 +00:00
df88f44255
clean up
...
ups
2007-07-28 09:18:48 +00:00
4b8f594966
app -> main.application
2007-07-27 09:40:58 +00:00
47b89cc411
Fixed bug in esvd for m>n
2007-07-26 18:32:48 +00:00
7fd4ac6225
pls opt fix
2007-07-26 18:32:27 +00:00
b35f814ef0
Added center check button on lineview
2007-07-26 18:26:50 +00:00
dc7f7dbde2
Added existing_identifiers function to Dataset.
...
Added colouring drag'n'drop to DAGPlot in gobrowser module.
2007-07-26 15:45:42 +00:00
a45743c31e
Added main.py that now contains the One & Only Singleton instance of these classes:
...
- Navigator
- Aplication
- Workflow
- Project
- Options
Corresponding changes have been added in lots of other files to account for this, but
the access to these objects should now be a lot easier.
2007-07-26 12:35:59 +00:00
524c90fcf7
Updated to handle new numpy/scipy.
2007-07-24 12:19:13 +00:00
05274b4f0b
confidence
2007-07-23 18:07:10 +00:00
a05d0faa0d
Lib updates
2007-07-23 17:33:21 +00:00
a503ffcdf8
Fixed linewidth in selection in scatter plots.
2007-07-05 11:57:21 +00:00
d29013a863
T-test now works, and outputs a histogram as well as t-values and p-values.
2007-07-03 16:25:38 +00:00
99987999db
Broke up a too long line.
2007-07-02 09:54:56 +00:00
4eaea2fe59
Added empty lists as default values for all_data and all_plots in Options, so
...
that subclasses of Options will work with the GUI without modifications.
2007-06-28 21:33:09 +00:00
68cc583d2c
Added common_dimensions(ds) that lists common dimensions between two
...
datasets.
2007-06-22 15:35:45 +00:00
ff2c42902f
Commented out some log lines that just cluttered the log.
2007-06-21 10:25:17 +00:00
ebe7621817
some biocondoctur utilities
2007-05-06 13:51:06 +00:00
a0faed2614
Forgot some ...
2007-04-24 17:21:40 +00:00
34ae426c86
Added correlation plot and moved colorbar to plots
2007-04-24 17:17:31 +00:00
90bb25eb55
added default mappable to None
2007-04-24 17:16:34 +00:00
31ac569c3e
Added colorbar shortcut
2007-04-24 17:04:29 +00:00
b02773b4e6
pls loading plot now have correct name
2007-03-15 10:38:52 +00:00
1c48315a0f
Added debug output.
2007-03-14 17:26:40 +00:00
438a268b1d
Inserted visible header sort
2007-03-14 16:34:50 +00:00
3d2492578e
whitespace
2007-03-14 16:33:54 +00:00
3bd21ab089
metric support
2007-03-14 16:33:16 +00:00
48047f1395
Moved lots of stuff back to sandbox
2007-03-14 16:32:49 +00:00
7f1f639ee7
Updates on metric, whitespace
2007-03-14 16:31:25 +00:00
22f6e3284c
whitespace
2007-03-14 16:30:18 +00:00
818dc0b2b0
added a logger for constructor calls
2007-03-14 16:27:23 +00:00
212da78933
correct comp update
2007-03-14 16:17:21 +00:00
00dd3e8d9d
added validation on identifiers input
2007-03-14 16:06:16 +00:00
9cbefb5705
in write_ftsv: adjusted so it splits specifically on tab, whitespace allowed in annotations
2007-03-14 10:24:49 +00:00
28e6c52f78
Fixed bug with hidden dimensions.
2007-03-01 15:06:33 +00:00
d699afa6a5
fixed bu when trying to drag anything over an empty view
2007-03-01 15:03:53 +00:00
6101bf850c
Changed CategoryDataset ftsv files to be written with 0 and 1 instead of True and False.
2007-02-28 16:33:11 +00:00
89636962a7
Added Workflow.get_data_file_name() which returns the full path to a given
...
data file, or None if the file does not exist. This is tested in the test
workflow.
2007-02-28 14:56:24 +00:00
281337251d
Added selection of lines in network plot
2007-02-27 21:19:24 +00:00
78183df0e9
Alignment of function boxes
2007-02-27 18:14:58 +00:00
b754a5df44
Update from change of plots/view
2007-02-27 16:31:18 +00:00
61cfd00558
Division of plots -> view/plots
2007-02-27 16:28:03 +00:00
059cddbc16
Division of plots -> view/plots
2007-02-27 16:27:39 +00:00
686a1fdcd1
network/venn plot now maximizes the space available
2007-02-27 15:42:27 +00:00
d27278241c
oops ... (broken code fixed)
2007-02-27 15:08:00 +00:00
4de65f1085
Clean up
2007-02-27 15:05:21 +00:00
f73a6db0ee
Added ctrl+arrows to navigate between plots.
2007-02-26 23:00:25 +00:00
eacb44f32a
Removed "Edit" menu.
2007-02-26 22:12:32 +00:00
d040f11c2f
Added identifier list update on selection changed.
2007-02-26 18:02:34 +00:00
537dc9f0ec
Cleanup of selection browser module. Added comments, fixed some bits of code.
2007-02-26 14:35:31 +00:00
c0bbe24c39
No selections in scatter marker now updates to no selection instead of last selection
2007-02-26 12:11:28 +00:00
a6fbef9cfa
scatter plot selected markers are now on top (visible)
2007-02-26 11:20:02 +00:00
2f60d0663d
Clean up of import statements
2007-02-26 09:08:50 +00:00
5ed602f355
Lots of changes .... (new selector, mode updates, histogram selection, ++)
2007-02-26 08:00:36 +00:00
3ee8439e07
Added selection listeners to plots in context menu
2007-02-26 07:58:33 +00:00
a614908436
Size of current selection is now updated in details
2007-02-23 11:12:03 +00:00
41e8ed511b
Fixed dim_cursor_changed to to use the correct treemodel, and added show/hide on selection details
2007-02-23 10:46:04 +00:00
0d8702bb71
added show/hide on dimensions
2007-02-21 19:57:27 +00:00
2bae169f38
Annotation display now works (sort of).
2007-02-21 16:39:04 +00:00
28aca8c621
added project to selection controller
2007-02-21 13:57:48 +00:00
8c03338b75
hypergeometric test (scipy version has errors)
2007-02-21 13:03:51 +00:00
48165d1aed
Updated the selection controller with sorting ++
2007-02-21 12:41:37 +00:00
f0b2660813
Selection listeners are now notified when new dimensions are added (because
...
this implies that an empty selection is made on the new dimension).
2007-02-21 12:05:08 +00:00
5800e7e362
Fixed a bug that prevented the first selection on a dimension to come from a
...
dataset.
2007-02-21 11:49:43 +00:00
a5955f9b59
Now updates the DimListConroller when a CategoryDataset is drag'n'dropped into
...
SelectionListController.
2007-02-21 11:43:00 +00:00
c5c4f13a19
Fixed some excessively long lines.
2007-02-21 11:08:20 +00:00
2cc4e86b0a
Split selections.py into three different controller classes, one for each list. There
...
is still some work to be done, and bugs to be fixed.
2007-02-21 00:00:26 +00:00
a2195bcb4b
Added Import annotations option.
2007-02-16 11:23:29 +00:00
6809c1a454
Added some annotation support in selections.py, including the beginning of a
...
menu option to add an arbitrary annotation alongside identifiers.
2007-02-15 22:57:40 +00:00
b17f04466b
Added read_annotations_file() which reads a tab delimited file containing
...
annotations to identifiers along a dimension.
2007-02-15 22:42:55 +00:00
4319e8630e
fixed error in typechecking
2007-02-15 13:36:36 +00:00
fc33c2dbfc
factored out packer
2007-02-09 14:02:58 +00:00
15c89fb9b5
Factored out packer
...
A packer.py
2007-02-09 14:02:39 +00:00
7eb13b14cb
Removed resolution arg to Circle to avoid construction of a circlepolygon (deprecated)
2007-02-02 12:21:19 +00:00
320cd97512
Removed noise generating print statements.
2007-01-31 14:58:37 +00:00
75b66914fd
Fixed bug by removing hardcoded filename.
2007-01-31 14:56:43 +00:00
74cb30428c
Added annotations to identifiers, and converted the unused annotationtest.py to
...
test the new module.
2007-01-31 14:19:23 +00:00
1863bfc564
Save plot enabled
2007-01-31 13:26:46 +00:00
d1205ae67f
Removed colorbar
2007-01-31 13:01:09 +00:00
37feb1c25b
bugfix on P scale
2007-01-31 13:00:36 +00:00
2cfa3ca415
spin on a/o, colorbar on keypress
2007-01-31 12:59:21 +00:00
63be80aa92
pls options added
2007-01-31 12:03:11 +00:00
088f180b5d
Barplot, lots of changes in scatter, disabled modes, removed labels, bugfix on lasso
2007-01-31 12:02:11 +00:00
