pls options added
This commit is contained in:
parent
088f180b5d
commit
63be80aa92
@ -1,9 +1,10 @@
|
||||
"""This module contains bilinear models(Functions)
|
||||
"""
|
||||
|
||||
import os
|
||||
import pygtk
|
||||
import gtk
|
||||
import gtk.glade
|
||||
import fluents
|
||||
from fluents.workflow import Function, OptionsDialog, Options
|
||||
from fluents.dataset import Dataset
|
||||
from fluents import plots, dataset, workflow, logger
|
||||
@ -75,6 +76,9 @@ class PCA(Model):
|
||||
|
||||
jk_segments = pca_jkP(self.model['E0'], aopt, n_sets)
|
||||
Pcal = self.model['P'][:,:aopt]
|
||||
# add the scale to P
|
||||
tnorm = scipy.apply_along_axis(norm, 0, self.model['T'])
|
||||
Pcal = Pcal*tnorm
|
||||
tsq = hotelling(jk_segments, Pcal, p_center,
|
||||
cov_center, alpha, crot, strict)
|
||||
self.model['p_tsq'] = tsq
|
||||
@ -95,7 +99,7 @@ class PCA(Model):
|
||||
#####
|
||||
if do_lev_s:
|
||||
# sample leverages
|
||||
tnorm = scipy.apply_along_axis(norm, 0, dat['T']) # norm of T-columns
|
||||
tnorm = scipy.apply_along_axis(norm, 0, dat['T']) # norm of Ts
|
||||
s_lev = leverage(amax, tnorm)
|
||||
dat['s_lev'] = s_lev
|
||||
if do_lev_v:
|
||||
@ -191,13 +195,22 @@ class PLS(Model):
|
||||
Model.__init__(self, id, name)
|
||||
self._options = PlsOptions()
|
||||
|
||||
def pre_validation(self, amax, n_sets, val_engine):
|
||||
def validation(self, amax, n_sets, cv_val_method):
|
||||
"""Returns rmsec,rmsep for model.
|
||||
"""
|
||||
rmsep, aopt = val_engine(self.model['E0'], self.model['F0'],
|
||||
amax, n_sets)
|
||||
self.model['rmsep'] = rmsep.mean(0)
|
||||
self.model['aopt'] = aopt
|
||||
m, n = self.model['E0'].shape
|
||||
if m>n:
|
||||
val_engine = w_pls_cv_val
|
||||
else:
|
||||
val_engine = pls_val
|
||||
if self._options['calc_cv']==True:
|
||||
rmsep, aopt = val_engine(self.model['E0'], self.model['F0'],
|
||||
amax, n_sets)
|
||||
self.model['rmsep'] = rmsep[:,:-1]
|
||||
self.model['aopt'] = aopt
|
||||
else:
|
||||
self.model['rmsep'] = None
|
||||
self.model['aopt'] = self._options['aopt']
|
||||
|
||||
def confidence(self, aopt, n_sets, alpha, p_center,
|
||||
crot, strict, cov_center ):
|
||||
@ -205,21 +218,35 @@ class PLS(Model):
|
||||
Supported parameters: W
|
||||
"""
|
||||
aopt = self.model['aopt']
|
||||
jk_segments = pls_jkW(self.model['E0'], self.model['F0'],
|
||||
aopt, n_sets)
|
||||
Wcal = self.model['W'][:,:aopt]
|
||||
tsq = hotelling(jk_segments, Wcal, p_center,
|
||||
alpha, crot, strict, cov_center)
|
||||
self.model['w_tsq'] = tsq
|
||||
if self._options['calc_conf']:
|
||||
jk_segments = pls_jkW(self.model['E0'], self.model['F0'],
|
||||
aopt, n_sets)
|
||||
Wcal = self.model['W'][:,:aopt]
|
||||
# ensure that Wcal is scaled
|
||||
tnorm = scipy.apply_along_axis(norm, 0, self.model['T'][:,:aopt])
|
||||
Wcal = Wcal*tnorm
|
||||
tsq = hotelling(jk_segments, Wcal, p_center,
|
||||
alpha, crot, strict, cov_center)
|
||||
self.model['w_tsq'] = tsq
|
||||
else:
|
||||
self.model['w_tsq'] = None
|
||||
|
||||
def permutation_confidence(self, a, b, aopt, reg, n_iter, algo,
|
||||
sim_method):
|
||||
"""Estimates sign. vars by controlling fdr."""
|
||||
"""Estimates cut off on significant vars by controlling fdr."""
|
||||
|
||||
qvals_sorted, qvals = pls_qvals(a, b, aopt=None,
|
||||
alpha=.4, n_iter=20, algo='pls',
|
||||
sim_method='shuffle', )
|
||||
|
||||
if self._options['calc_qvals']==True:
|
||||
qvals_sorted, qvals = pls_qvals(a, b,
|
||||
aopt=None,
|
||||
alpha=reg,
|
||||
n_iter=n_iter,
|
||||
algo='pls',
|
||||
sim_method=sim_method)
|
||||
self.model['qval'] = qvals
|
||||
self.model['qval_sorted'] = qvals_sorted
|
||||
else:
|
||||
self.model['qval'] = None
|
||||
self.model['qval_sorted'] = None
|
||||
|
||||
def make_model(self, a, b, amax, scale, mode, engine):
|
||||
"""Make model on amax components.
|
||||
@ -243,7 +270,8 @@ class PLS(Model):
|
||||
# y vars
|
||||
ids_3 = [dim_name_3, DY.get_identifiers(dim_name_3, sorted=True)]
|
||||
# components (hidden)
|
||||
pc_ids = ['_comp', map(str, range(self.model['aopt']))]
|
||||
pc_ids = ['_comp', map(str, range(self._options['amax']))]
|
||||
pc_ids_opt = ['_comp', map(str, range(self.model['aopt']))]
|
||||
zero_dim = ['_doe',['0']] # null dim, vector (hidden)
|
||||
|
||||
match_ids = {'E':[ids_0, ids_1],
|
||||
@ -257,11 +285,11 @@ class PLS(Model):
|
||||
'qval':[ids_1, zero_dim],
|
||||
'qval_sorted':[ids_1, zero_dim],
|
||||
'w_tsq':[ids_1, zero_dim],
|
||||
'rmsep':[pc_ids, zero_dim],
|
||||
'rmsep':[ids_3, pc_ids],
|
||||
}
|
||||
|
||||
array = self.model[name]
|
||||
M = Dataset(array,identifiers=match_ids[name],name=name)
|
||||
M = Dataset(array, identifiers=match_ids[name], name=name)
|
||||
return M
|
||||
|
||||
def get_out_plots(self, options):
|
||||
@ -274,19 +302,21 @@ class PLS(Model):
|
||||
return out
|
||||
|
||||
def run_o(self, a, b):
|
||||
"""Run PLS with present options."""
|
||||
options = self._options
|
||||
self._dataset['X'] = a
|
||||
self._dataset['Y'] = b
|
||||
self._data['X'] = a.asarray()
|
||||
self._data['Y'] = b.asarray()
|
||||
|
||||
if options['center']:
|
||||
self.model['E0'] = options['center_mth'](self._data['X'])
|
||||
self.model['F0'] = options['center_mth'](self._data['Y'])
|
||||
else:
|
||||
self.model['E0'] = self._data['X']
|
||||
self.model['F0'] = self._data['Y']
|
||||
|
||||
self.pre_validation(**options.pre_validation_options())
|
||||
|
||||
self.validation(**options.validation_options())
|
||||
self.make_model(self.model['E0'], self.model['F0'],
|
||||
**options.make_model_options())
|
||||
# variance captured
|
||||
@ -307,7 +337,7 @@ class PLS(Model):
|
||||
return out
|
||||
|
||||
def run(self, a, b):
|
||||
"""Run Pls with option gui.
|
||||
"""Run PLS with option gui.
|
||||
"""
|
||||
dialog = PlsOptionsDialog([a, b], self._options)
|
||||
dialog.show_all()
|
||||
@ -317,8 +347,10 @@ class PLS(Model):
|
||||
if response == gtk.RESPONSE_OK:
|
||||
# set output data and plots
|
||||
dialog.set_output()
|
||||
|
||||
#run with current data and options
|
||||
|
||||
#run with current data and options
|
||||
for key, val in self._options.items():
|
||||
print (key, val)
|
||||
return self.run_o(a, b)
|
||||
|
||||
class Packer:
|
||||
@ -342,7 +374,7 @@ class Packer:
|
||||
|
||||
if axis == 1:
|
||||
self._array = self._array.T
|
||||
u,s,vt = svd(self._array,full_matrices=0)
|
||||
u, s, vt = svd(self._array,full_matrices=0)
|
||||
self._inflater = vt.T
|
||||
self._packed_data = u*s
|
||||
return self._packed_data
|
||||
@ -391,11 +423,12 @@ class PcaOptions(Options):
|
||||
('p_tsq', 't2', False),
|
||||
('rmsep', 'RMSEP', False)
|
||||
]
|
||||
|
||||
|
||||
# (class, name, sensitive, ticked)
|
||||
opt['all_plots'] = [(blmplots.PcaScorePlot, 'Scores', True),
|
||||
(blmplots.PcaLoadingPlot, 'Loadings', True),
|
||||
(blmplots.LineViewXc, 'Line view', True),
|
||||
(blmplots.PredictionErrorPlot, 'Residual Error', True)
|
||||
(blmplots.PredictionErrorPlot, 'Residual Error', False)
|
||||
]
|
||||
|
||||
opt['out_data'] = ['T','P', 'p_tsq']
|
||||
@ -405,7 +438,7 @@ class PcaOptions(Options):
|
||||
|
||||
def make_model_options(self):
|
||||
"""Options for make_model method."""
|
||||
opt_list = ['scale','mode', 'amax']
|
||||
opt_list = ['scale', 'mode', 'amax']
|
||||
return self._copy_from_list(opt_list)
|
||||
|
||||
def confidence_options(self):
|
||||
@ -428,29 +461,29 @@ class PlsOptions(Options):
|
||||
Options.__init__(self)
|
||||
self._set_default()
|
||||
|
||||
def _set_default(self):
|
||||
def _set_default(self):
|
||||
opt = {}
|
||||
opt['algo'] = 'pls'
|
||||
opt['engine'] = engines.pls
|
||||
opt['mode'] = 'normal' # how much info to calculate
|
||||
opt['lod'] = 'compact' # how much info to store
|
||||
opt['amax'] = 3
|
||||
opt['aopt'] = 3
|
||||
opt['amax'] = 10
|
||||
opt['aopt'] = 10
|
||||
opt['auto_aopt'] = False
|
||||
opt['center'] = True
|
||||
opt['center_mth'] = mat_center
|
||||
opt['scale'] = 'scores'
|
||||
opt['calc_conf'] = False
|
||||
opt['n_sets'] = 10
|
||||
|
||||
opt['calc_conf'] = False
|
||||
opt['n_sets'] = 5
|
||||
opt['strict'] = True
|
||||
opt['p_center'] = 'med'
|
||||
opt['alpha'] = .2
|
||||
opt['alpha'] = .8
|
||||
opt['cov_center'] = 'med'
|
||||
opt['crot'] = True
|
||||
|
||||
opt['calc_cv'] = True
|
||||
opt['calc_pert'] = False
|
||||
opt['val_engine'] = w_pls_cv_val
|
||||
opt['calc_cv'] = False
|
||||
opt['cv_val_method'] = 'random'
|
||||
opt['cv_val_sets'] = opt['n_sets']
|
||||
|
||||
opt['all_data'] = [('T', 'scores', True),
|
||||
('P', 'loadings', True),
|
||||
@ -458,19 +491,23 @@ class PlsOptions(Options):
|
||||
('p_tsq', 't2', False),
|
||||
('rmsep', 'RMSEP', False)
|
||||
]
|
||||
|
||||
|
||||
# (class, name, sensitive, ticked)
|
||||
opt['all_plots'] = [(blmplots.PlsScorePlot, 'Scores', True),
|
||||
(blmplots.PlsLoadingPlot, 'Loadings', True),
|
||||
(blmplots.LineViewXc, 'Line view', True)]
|
||||
|
||||
opt['out_plots'] = [blmplots.PlsScorePlot,
|
||||
blmplots.PlsLoadingPlot,
|
||||
blmplots.LineViewXc]
|
||||
(blmplots.LineViewXc, 'Line view', True),
|
||||
(blmplots.PredictionErrorPlot, 'Residual Error', False),
|
||||
(blmplots.RMSEPPlot, 'RMSEP', False)
|
||||
]
|
||||
|
||||
opt['out_data'] = ['T','P', 'p_tsq']
|
||||
opt['out_plots'] = [blmplots.PlsScorePlot,blmplots.PlsLoadingPlot,blmplots.LineViewXc]
|
||||
|
||||
opt['out_data'] = None
|
||||
|
||||
opt['pack'] = False
|
||||
opt['calc_qvals'] = False
|
||||
opt['q_pert_mth'] = 'shuffle_vars'
|
||||
opt['q_pert_method'] = 'shuffle_rows'
|
||||
opt['q_iter'] = 20
|
||||
|
||||
self.update(opt)
|
||||
@ -485,20 +522,23 @@ class PlsOptions(Options):
|
||||
opt_list = ['n_sets', 'aopt', 'alpha', 'p_center',
|
||||
'strict', 'crot', 'cov_center']
|
||||
return self._copy_from_list(opt_list)
|
||||
|
||||
def pre_validation_options(self):
|
||||
|
||||
def validation_options(self):
|
||||
"""Options for pre_validation method."""
|
||||
opt_list = ['amax', 'n_sets', 'val_engine']
|
||||
return self._copy_from_list(opt_list)
|
||||
opt_list = ['amax', 'n_sets', 'cv_val_method']
|
||||
return self._copy_from_list(opt_list)
|
||||
|
||||
def permutation_confidence(self):
|
||||
opt_list = ['q_pert_method', 'q_iter']
|
||||
return self._copy_from_list(opt_list)
|
||||
|
||||
class PcaOptionsDialog(OptionsDialog):
|
||||
"""Options dialog for Principal Component Analysis.
|
||||
"""
|
||||
def __init__(self, data, options, input_names=['X']):
|
||||
OptionsDialog.__init__(self, data, options, input_names)
|
||||
|
||||
glade_file = os.path.join(fluents.DATADIR, 'pca_options.glade')
|
||||
#glade_file = os.path.join(fluents.DATADIR, 'pca_options.glade')
|
||||
glade_file = os.path.join("/home/flatberg/fluents/fluents/", 'pca_options.glade')
|
||||
|
||||
notebook_name = "vbox1"
|
||||
page_name = "Options"
|
||||
@ -508,19 +548,24 @@ class PcaOptionsDialog(OptionsDialog):
|
||||
"on_aopt_value_changed" : self.on_aopt_changed,
|
||||
"auto_aopt_toggled" : self.auto_aopt_toggled,
|
||||
"center_toggled" : self.center_toggled,
|
||||
"on_scale_changed" : self.on_scale_changed,
|
||||
#"on_scale_changed" : self.on_scale_changed,
|
||||
"on_val_none" : self.val_toggled,
|
||||
"on_val_cv" : self.cv_toggled,
|
||||
"on_val_pert" : self.pert_toggled,
|
||||
"on_cv_method_changed" : self.on_cv_method_changed,
|
||||
"on_cv_sets_changed" : self.on_cv_sets_changed,
|
||||
"on_pert_sets_changed" : self.on_pert_sets_changed,
|
||||
"on_conf_toggled" : self.on_conf_toggled
|
||||
"on_conf_toggled" : self.on_conf_toggled,
|
||||
"on_subset_loc_changed" : self.on_subset_loc_changed,
|
||||
"on_cov_loc_changed" : self.on_cov_loc_changed,
|
||||
"on_alpha_changed" : self.on_alpha_changed,
|
||||
"on_rot_changed" : self.on_rot_changed
|
||||
}
|
||||
|
||||
self.wTree.signal_autoconnect(dic)
|
||||
|
||||
# set/ensure valid default values/ranges
|
||||
#
|
||||
amax_sb = self.wTree.get_widget("amax_spinbutton")
|
||||
max_comp = min(data[0].shape) # max num of components
|
||||
if self._options['amax']>max_comp:
|
||||
@ -534,8 +579,8 @@ class PcaOptionsDialog(OptionsDialog):
|
||||
aopt_sb.get_adjustment().set_all(self._options['aopt'], 1, self._options['amax'], 1, 0, 0)
|
||||
|
||||
# scale
|
||||
scale_cb = self.wTree.get_widget("scale_combobox")
|
||||
scale_cb.set_active(0)
|
||||
# scale_cb = self.wTree.get_widget("scale_combobox")
|
||||
# scale_cb.set_active(0)
|
||||
|
||||
# validation frames
|
||||
if self._options['calc_cv']==False:
|
||||
@ -550,11 +595,22 @@ class PcaOptionsDialog(OptionsDialog):
|
||||
|
||||
# confidence
|
||||
if self._options['calc_conf']==True:
|
||||
self.wTree.get_widget("subset_frame").set_sensitive(True)
|
||||
self.wTree.get_widget("subset_expander").set_sensitive(True)
|
||||
else:
|
||||
self.wTree.get_widget("subset_frame").set_sensitive(False)
|
||||
|
||||
|
||||
self.wTree.get_widget("subset_expander").set_sensitive(False)
|
||||
|
||||
cb = self.wTree.get_widget("subset_loc")
|
||||
_m = {'med': 0, 'mean': 1, 'full_model': 2}
|
||||
cb.set_active(_m.get(self._options['p_center']))
|
||||
|
||||
cb = self.wTree.get_widget("cov_loc")
|
||||
_m = {'med': 0, 'mean': 1}
|
||||
cb.set_active(_m.get(self._options['cov_center']))
|
||||
|
||||
hs = self.wTree.get_widget("alpha_scale")
|
||||
hs.set_value(self._options['alpha'])
|
||||
|
||||
|
||||
def on_amax_changed(self, sb):
|
||||
logger.log("debug", "amax changed: new value: %s" %sb.get_value_as_int())
|
||||
amax = sb.get_value_as_int()
|
||||
@ -585,14 +641,14 @@ class PcaOptionsDialog(OptionsDialog):
|
||||
logger.log("debug", "centering set to False")
|
||||
self._options['center'] = False
|
||||
|
||||
def on_scale_changed(self, cb):
|
||||
scale = cb.get_active_text()
|
||||
if scale=='Scores':
|
||||
self._options['scale'] = 'scores'
|
||||
elif scale=='Loadings':
|
||||
self._options['scale'] = 'loads'
|
||||
else:
|
||||
raise IOError
|
||||
#def on_scale_changed(self, cb):
|
||||
# scale = cb.get_active_text()
|
||||
# if scale=='Scores':
|
||||
# self._options['scale'] = 'scores'
|
||||
# elif scale=='Loadings':
|
||||
# self._options['scale'] = 'loads'
|
||||
# else:
|
||||
# raise IOError
|
||||
|
||||
def val_toggled(self, tb):
|
||||
"""Callback for validation: None. """
|
||||
@ -657,17 +713,242 @@ class PcaOptionsDialog(OptionsDialog):
|
||||
def on_conf_toggled(self, tb):
|
||||
if tb.get_active():
|
||||
self._options['calc_conf'] = False
|
||||
self.wTree.get_widget("subset_frame").set_sensitive(False)
|
||||
self.wTree.get_widget("subset_expander").set_sensitive(False)
|
||||
else:
|
||||
self._options['calc_conf'] = True
|
||||
self.wTree.get_widget("subset_frame").set_sensitive(True)
|
||||
|
||||
|
||||
self.wTree.get_widget("subset_expander").set_sensitive(True)
|
||||
|
||||
def on_subset_loc_changed(self, cb):
|
||||
method = cb.get_active_text()
|
||||
if method=='Full model':
|
||||
self._options['p_center'] = 'full_model'
|
||||
elif method=='Median':
|
||||
self._options['p_center'] = 'med'
|
||||
elif method=='Mean':
|
||||
self._options['p_center'] = 'mean'
|
||||
|
||||
def on_cov_loc_changed(self, cb):
|
||||
method = cb.get_active_text()
|
||||
if method=='Median':
|
||||
self._options['cov_center'] = 'med'
|
||||
elif method=='Mean':
|
||||
self._options['cov_center'] = 'mean'
|
||||
|
||||
def on_alpha_changed(self, hs):
|
||||
self._options['alpha'] = hs.get_value()
|
||||
|
||||
def on_rot_changed(self, rg):
|
||||
proc, strict = rg
|
||||
if proc.get_active():
|
||||
self._options['crot'] = True
|
||||
else:
|
||||
self._options['crot'] = True
|
||||
self._options['strict'] = True
|
||||
|
||||
|
||||
class PlsOptionsDialog(OptionsDialog):
|
||||
"""Options dialog for Partial Least Squares Regression.
|
||||
"""Options dialog for Partial Least squares regression.
|
||||
"""
|
||||
|
||||
def __init__(self, data, options, input_names=['X', 'Y']):
|
||||
OptionsDialog.__init__(self, data, options, input_names)
|
||||
#glade_file = os.path.join(fluents.DATADIR, 'pca_options.glade')
|
||||
glade_file = os.path.join("/home/flatberg/fluents/fluents/", 'pls_options.glade')
|
||||
|
||||
notebook_name = "vbox1"
|
||||
page_name = "Options"
|
||||
self.add_page_from_glade(glade_file, notebook_name, page_name)
|
||||
# connect signals to handlers
|
||||
dic = {"on_amax_value_changed" : self.on_amax_changed,
|
||||
"on_aopt_value_changed" : self.on_aopt_changed,
|
||||
"auto_aopt_toggled" : self.auto_aopt_toggled,
|
||||
"center_toggled" : self.center_toggled,
|
||||
#"on_scale_changed" : self.on_scale_changed,
|
||||
"on_val_none" : self.val_toggled,
|
||||
"on_val_cv" : self.cv_toggled,
|
||||
"on_cv_method_changed" : self.on_cv_method_changed,
|
||||
"on_cv_sets_changed" : self.on_cv_sets_changed,
|
||||
"on_conf_toggled" : self.conf_toggled,
|
||||
"on_subset_loc_changed" : self.on_subset_loc_changed,
|
||||
"on_cov_loc_changed" : self.on_cov_loc_changed,
|
||||
"on_alpha_changed" : self.on_alpha_changed,
|
||||
"on_rot_changed" : self.on_rot_changed,
|
||||
"on__toggled" : self.conf_toggled,
|
||||
"on_qval_changed" : self.on_qval_changed,
|
||||
"on_iter_changed" : self.on_iter_changed
|
||||
}
|
||||
|
||||
self.wTree.signal_autoconnect(dic)
|
||||
|
||||
# set/ensure valid default values/ranges
|
||||
#
|
||||
amax_sb = self.wTree.get_widget("amax_spinbutton")
|
||||
max_comp = min(data[0].shape) # max num of components
|
||||
if self._options['amax']>max_comp:
|
||||
logger.log('debug', 'amax default too large ... adjusting')
|
||||
self._options['amax'] = max_comp
|
||||
amax_sb.get_adjustment().set_all(self._options['amax'], 1, max_comp, 1, 0, 0)
|
||||
# aopt spin button
|
||||
aopt_sb = self.wTree.get_widget("aopt_spinbutton")
|
||||
if self._options['aopt']>self._options['amax']:
|
||||
self._options['aopt'] = self._options['amax'] + 1 - 1
|
||||
aopt_sb.get_adjustment().set_all(self._options['aopt'], 1, self._options['amax'], 1, 0, 0)
|
||||
|
||||
# scale
|
||||
# scale_cb = self.wTree.get_widget("scale_combobox")
|
||||
# scale_cb.set_active(0)
|
||||
|
||||
# validation frames
|
||||
if self._options['calc_cv']==False:
|
||||
cv_frame = self.wTree.get_widget("cv_frame")
|
||||
cv_frame.set_sensitive(False)
|
||||
|
||||
cv = self.wTree.get_widget("cv_method").set_active(0)
|
||||
|
||||
# confidence
|
||||
if self._options['calc_conf']==True:
|
||||
self.wTree.get_widget("subset_expander").set_sensitive(True)
|
||||
else:
|
||||
self.wTree.get_widget("subset_expander").set_sensitive(False)
|
||||
|
||||
cb = self.wTree.get_widget("subset_loc")
|
||||
_m = {'med': 0, 'mean': 1, 'full_model': 2}
|
||||
cb.set_active(_m.get(self._options['p_center']))
|
||||
|
||||
cb = self.wTree.get_widget("cov_loc")
|
||||
_m = {'med': 0, 'mean': 1}
|
||||
cb.set_active(_m.get(self._options['cov_center']))
|
||||
|
||||
hs = self.wTree.get_widget("alpha_scale")
|
||||
hs.set_value(self._options['alpha'])
|
||||
|
||||
tb = self.wTree.get_widget("qvals")
|
||||
tb.set_sensitive(True)
|
||||
|
||||
|
||||
def on_amax_changed(self, sb):
|
||||
logger.log("debug", "amax changed: new value: %s" %sb.get_value_as_int())
|
||||
amax = sb.get_value_as_int()
|
||||
# update aopt if needed
|
||||
if amax<self._options['aopt']:
|
||||
self._options['aopt'] = amax
|
||||
aopt_sb = self.wTree.get_widget("aopt_spinbutton")
|
||||
aopt_sb.get_adjustment().set_all(self._options['aopt'], 1, amax, 1, 0, 0)
|
||||
self._options['amax'] = sb.get_value_as_int()
|
||||
|
||||
def on_aopt_changed(self, sb):
|
||||
aopt = sb.get_value_as_int()
|
||||
self._options['aopt'] = aopt
|
||||
|
||||
def auto_aopt_toggled(self, tb):
|
||||
aopt_sb = self.wTree.get_widget("aopt_spinbutton")
|
||||
if tb.get_active():
|
||||
self._options['auto_aopt'] = True
|
||||
aopt_sb.set_sensitive(False)
|
||||
else:
|
||||
self._options['auto_aopt'] = False
|
||||
aopt_sb.set_sensitive(True)
|
||||
|
||||
def center_toggled(self, tb):
|
||||
if tb.get_active():
|
||||
self._options['center'] = True
|
||||
else:
|
||||
logger.log("debug", "centering set to False")
|
||||
self._options['center'] = False
|
||||
|
||||
#def on_scale_changed(self, cb):
|
||||
# scale = cb.get_active_text()
|
||||
# if scale=='Scores':
|
||||
# self._options['scale'] = 'scores'
|
||||
# elif scale=='Loadings':
|
||||
# self._options['scale'] = 'loads'
|
||||
# else:
|
||||
# raise IOError
|
||||
|
||||
def val_toggled(self, tb):
|
||||
"""Callback for validation: None. """
|
||||
cv_frame = self.wTree.get_widget("cv_frame")
|
||||
cv_tb = self.wTree.get_widget("cv_toggle")
|
||||
if tb.get_active():
|
||||
self._options['calc_cv'] = False
|
||||
cv_frame.set_sensitive(False)
|
||||
cv_tb.set_sensitive(False)
|
||||
else:
|
||||
cv_tb.set_sensitive(True)
|
||||
if cv_tb.get_active():
|
||||
cv_frame.set_sensitive(True)
|
||||
self._options['calc_cv'] = True
|
||||
|
||||
def cv_toggled(self, tb):
|
||||
cv_frame = self.wTree.get_widget("cv_frame")
|
||||
val_tb = self.wTree.get_widget("val_none_toggle")
|
||||
if tb.get_active():
|
||||
cv_frame.set_sensitive(True)
|
||||
self._options['calc_cv'] = True
|
||||
else:
|
||||
cv_frame.set_sensitive(False)
|
||||
self._options['calc_cv'] = False
|
||||
|
||||
def on_cv_method_changed(self, cb):
|
||||
method = cb.get_active_text()
|
||||
if method == 'Random':
|
||||
self._options['cv_val_method'] = 'random'
|
||||
|
||||
def on_cv_sets_changed(self, sb):
|
||||
val = sb.get_value_as_int()
|
||||
self._options['cv_val_sets'] = val
|
||||
|
||||
def conf_toggled(self, tb):
|
||||
if tb.get_active():
|
||||
self._options['calc_conf'] = False
|
||||
self.wTree.get_widget("subset_expander").set_sensitive(False)
|
||||
else:
|
||||
self._options['calc_conf'] = True
|
||||
self.wTree.get_widget("subset_expander").set_sensitive(True)
|
||||
|
||||
def on_subset_loc_changed(self, cb):
|
||||
method = cb.get_active_text()
|
||||
if method=='Full model':
|
||||
self._options['p_center'] = 'full_model'
|
||||
elif method=='Median':
|
||||
self._options['p_center'] = 'med'
|
||||
elif method=='Mean':
|
||||
self._options['p_center'] = 'mean'
|
||||
|
||||
def on_cov_loc_changed(self, cb):
|
||||
method = cb.get_active_text()
|
||||
if method=='Median':
|
||||
self._options['cov_center'] = 'med'
|
||||
elif method=='Mean':
|
||||
self._options['cov_center'] = 'mean'
|
||||
|
||||
def on_alpha_changed(self, hs):
|
||||
self._options['alpha'] = hs.get_value()
|
||||
|
||||
def on_rot_changed(self, rg):
|
||||
proc, strict = rg
|
||||
if proc.get_active():
|
||||
self._options['crot'] = True
|
||||
else:
|
||||
self._options['crot'] = True
|
||||
self._options['strict'] = True
|
||||
|
||||
def qval_toggled(self, tb):
|
||||
if tb.get_active():
|
||||
self._options['calc_qval'] = False
|
||||
print "Setting not sens"
|
||||
self.wTree.get_widget("qval_method").set_sensitive(False)
|
||||
self.wTree.get_widget("q_iter").set_sensitive(False)
|
||||
else:
|
||||
self._options['calc_qval'] = True
|
||||
self.wTree.get_widget("qval_method").set_sensitive(True)
|
||||
self.wTree.get_widget("q_iter").set_sensitive(True)
|
||||
|
||||
def on_iter_changed(self, sb):
|
||||
self._options['q_iter'] = sb.get_value()
|
||||
|
||||
def on_qval_changed(self, cb):
|
||||
q_method = cb.get_active_text()
|
||||
if method=='Shuffle rows':
|
||||
self._options['q_pert_method'] = 'shuffle'
|
||||
|
||||
|
||||
|
Reference in New Issue
Block a user