Commit Graph

274 Commits

Author SHA1 Message Date
953662e1fb Added a couple of more assertions to the test of read_annotations_file() 2007-02-15 22:54:08 +00:00
e6cf8f765a Added read_annotations_file() 2007-02-15 22:49:40 +00:00
b17f04466b Added read_annotations_file() which reads a tab delimited file containing
annotations to identifiers along a dimension.
2007-02-15 22:42:55 +00:00
4319e8630e fixed error in typechecking 2007-02-15 13:36:36 +00:00
fc33c2dbfc factored out packer 2007-02-09 14:02:58 +00:00
15c89fb9b5 Factored out packer
A    packer.py
2007-02-09 14:02:39 +00:00
7eb13b14cb Removed resolution arg to Circle to avoid construction of a circlepolygon (deprecated) 2007-02-02 12:21:19 +00:00
320cd97512 Removed noise generating print statements. 2007-01-31 14:58:37 +00:00
75b66914fd Fixed bug by removing hardcoded filename. 2007-01-31 14:56:43 +00:00
74cb30428c Added annotations to identifiers, and converted the unused annotationtest.py to
test the new module.
2007-01-31 14:19:23 +00:00
1863bfc564 Save plot enabled 2007-01-31 13:26:46 +00:00
a7c60ffe64 added venn diagram test plot 2007-01-31 13:03:27 +00:00
240b0a4a9f New lasso icon 2007-01-31 13:02:25 +00:00
d1205ae67f Removed colorbar 2007-01-31 13:01:09 +00:00
37feb1c25b bugfix on P scale 2007-01-31 13:00:36 +00:00
2cfa3ca415 spin on a/o, colorbar on keypress 2007-01-31 12:59:21 +00:00
63be80aa92 pls options added 2007-01-31 12:03:11 +00:00
088f180b5d Barplot, lots of changes in scatter, disabled modes, removed labels, bugfix on lasso 2007-01-31 12:02:11 +00:00
e716db3fd2 Added center option to validation, + naming updates 2007-01-31 11:59:23 +00:00
29509902df bugfix on shape 2007-01-31 11:57:59 +00:00
8e607c7b1a bugfixed scaling issues 2007-01-31 11:57:04 +00:00
f064b7134d Removed scale option added pack 2007-01-31 11:56:28 +00:00
1d5929f14c pls options glade file 2007-01-31 11:55:43 +00:00
ed2848beb3 Errors when identifers dont match shape, + whitespace 2007-01-31 11:54:54 +00:00
48bb47ec86 Bugfixed pca 2007-01-25 12:36:32 +00:00
aeb37cf4cd Added supportp for tall X in PCA 2007-01-25 12:17:16 +00:00
fa3722600c pca options glade file 2007-01-25 12:15:30 +00:00
61bfc236e6 Changed location of PCA options glade file. 2007-01-25 12:15:19 +00:00
7a204a3426 Added option page to option dialog 2007-01-25 12:10:18 +00:00
1c2c2c8895 Multiple lib changes 2007-01-25 11:58:10 +00:00
a65d79697f Added Expand/Collapse menu choices to the GO browser context menu. This is
particularly useful when searching for GO terms, because the gtk TreeView
widget does not do interactive search in collapsed parts of the tree.
2007-01-21 16:16:37 +00:00
e03cc4ed4c Added a ScrolledWindow around the navigator. 2007-01-19 14:00:10 +00:00
7693f336ba Added a singleton project in the project module, so that the current project is
easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.

The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors. 

Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
f533344242 Added histogram in plot menu 2007-01-17 15:40:54 +00:00
7c20e6d780 Added simple histogram 2007-01-17 15:40:33 +00:00
1ffbf4f9e7 Added default implementation of set_current_selection in Plot, so that plots can safely
ignore selections without adding any code to the plot.

Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
06591e301e Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset. 2007-01-17 14:06:07 +00:00
c3c6e85044 Added ImagePlot, which displays a dataset as an image. 2007-01-17 13:20:04 +00:00
33c51505c4 Fixed the dataset loading so that it returns a correctly named Dataset. 2007-01-16 12:41:29 +00:00
f612dda72f Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
ea4c0af6de fixed shift/control on lasso 2007-01-15 15:46:24 +00:00
cacb0a27b7 Added "Save dataset" option to navigator context menu. 2007-01-15 13:58:56 +00:00
476c830a5e lasso 2007-01-15 13:47:47 +00:00
0a38cb7d4a added lasso 2007-01-15 13:47:18 +00:00
ee447b688c Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
58886726d8 Small updates. 2007-01-12 10:50:55 +00:00
ae3aa7e4aa Create Resnik distances and save them as ftsv. 2007-01-12 00:00:56 +00:00
08b7d8dd85 Added function to save fluents tab separated values (ftsv) files. 2007-01-11 23:24:05 +00:00
e4d7f8e5a2 Resnik distances between GO terms work now. 2007-01-11 22:01:31 +00:00
4b1d16ea78 Updated go-workflow. 2007-01-11 18:57:45 +00:00