Einar Ryeng
6809c1a454
Added some annotation support in selections.py, including the beginning of a
...
menu option to add an arbitrary annotation alongside identifiers.
2007-02-15 22:57:40 +00:00
Einar Ryeng
953662e1fb
Added a couple of more assertions to the test of read_annotations_file()
2007-02-15 22:54:08 +00:00
Einar Ryeng
e6cf8f765a
Added read_annotations_file()
2007-02-15 22:49:40 +00:00
Einar Ryeng
b17f04466b
Added read_annotations_file() which reads a tab delimited file containing
...
annotations to identifiers along a dimension.
2007-02-15 22:42:55 +00:00
Arnar Flatberg
4319e8630e
fixed error in typechecking
2007-02-15 13:36:36 +00:00
Arnar Flatberg
fc33c2dbfc
factored out packer
2007-02-09 14:02:58 +00:00
Arnar Flatberg
15c89fb9b5
Factored out packer
...
A packer.py
2007-02-09 14:02:39 +00:00
Arnar Flatberg
7eb13b14cb
Removed resolution arg to Circle to avoid construction of a circlepolygon (deprecated)
2007-02-02 12:21:19 +00:00
Einar Ryeng
320cd97512
Removed noise generating print statements.
2007-01-31 14:58:37 +00:00
Einar Ryeng
75b66914fd
Fixed bug by removing hardcoded filename.
2007-01-31 14:56:43 +00:00
Einar Ryeng
74cb30428c
Added annotations to identifiers, and converted the unused annotationtest.py to
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test the new module.
2007-01-31 14:19:23 +00:00
Arnar Flatberg
1863bfc564
Save plot enabled
2007-01-31 13:26:46 +00:00
Arnar Flatberg
a7c60ffe64
added venn diagram test plot
2007-01-31 13:03:27 +00:00
Arnar Flatberg
240b0a4a9f
New lasso icon
2007-01-31 13:02:25 +00:00
Arnar Flatberg
d1205ae67f
Removed colorbar
2007-01-31 13:01:09 +00:00
Arnar Flatberg
37feb1c25b
bugfix on P scale
2007-01-31 13:00:36 +00:00
Arnar Flatberg
2cfa3ca415
spin on a/o, colorbar on keypress
2007-01-31 12:59:21 +00:00
Arnar Flatberg
63be80aa92
pls options added
2007-01-31 12:03:11 +00:00
Arnar Flatberg
088f180b5d
Barplot, lots of changes in scatter, disabled modes, removed labels, bugfix on lasso
2007-01-31 12:02:11 +00:00
Arnar Flatberg
e716db3fd2
Added center option to validation, + naming updates
2007-01-31 11:59:23 +00:00
Arnar Flatberg
29509902df
bugfix on shape
2007-01-31 11:57:59 +00:00
Arnar Flatberg
8e607c7b1a
bugfixed scaling issues
2007-01-31 11:57:04 +00:00
Arnar Flatberg
f064b7134d
Removed scale option added pack
2007-01-31 11:56:28 +00:00
Arnar Flatberg
1d5929f14c
pls options glade file
2007-01-31 11:55:43 +00:00
Arnar Flatberg
ed2848beb3
Errors when identifers dont match shape, + whitespace
2007-01-31 11:54:54 +00:00
Arnar Flatberg
48bb47ec86
Bugfixed pca
2007-01-25 12:36:32 +00:00
Arnar Flatberg
aeb37cf4cd
Added supportp for tall X in PCA
2007-01-25 12:17:16 +00:00
Arnar Flatberg
fa3722600c
pca options glade file
2007-01-25 12:15:30 +00:00
Einar Ryeng
61bfc236e6
Changed location of PCA options glade file.
2007-01-25 12:15:19 +00:00
Arnar Flatberg
7a204a3426
Added option page to option dialog
2007-01-25 12:10:18 +00:00
Arnar Flatberg
1c2c2c8895
Multiple lib changes
2007-01-25 11:58:10 +00:00
Einar Ryeng
a65d79697f
Added Expand/Collapse menu choices to the GO browser context menu. This is
...
particularly useful when searching for GO terms, because the gtk TreeView
widget does not do interactive search in collapsed parts of the tree.
2007-01-21 16:16:37 +00:00
Einar Ryeng
e03cc4ed4c
Added a ScrolledWindow around the navigator.
2007-01-19 14:00:10 +00:00
Einar Ryeng
7693f336ba
Added a singleton project in the project module, so that the current project is
...
easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.
The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors.
Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
Arnar Flatberg
f533344242
Added histogram in plot menu
2007-01-17 15:40:54 +00:00
Arnar Flatberg
7c20e6d780
Added simple histogram
2007-01-17 15:40:33 +00:00
Einar Ryeng
1ffbf4f9e7
Added default implementation of set_current_selection in Plot, so that plots can safely
...
ignore selections without adding any code to the plot.
Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
Einar Ryeng
06591e301e
Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset.
2007-01-17 14:06:07 +00:00
Einar Ryeng
c3c6e85044
Added ImagePlot, which displays a dataset as an image.
2007-01-17 13:20:04 +00:00
Einar Ryeng
33c51505c4
Fixed the dataset loading so that it returns a correctly named Dataset.
2007-01-16 12:41:29 +00:00
Einar Ryeng
f612dda72f
Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
...
Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
Arnar Flatberg
ea4c0af6de
fixed shift/control on lasso
2007-01-15 15:46:24 +00:00
Einar Ryeng
cacb0a27b7
Added "Save dataset" option to navigator context menu.
2007-01-15 13:58:56 +00:00
Arnar Flatberg
476c830a5e
lasso
2007-01-15 13:47:47 +00:00
Arnar Flatberg
0a38cb7d4a
added lasso
2007-01-15 13:47:18 +00:00
Einar Ryeng
ee447b688c
Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
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adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
Einar Ryeng
58886726d8
Small updates.
2007-01-12 10:50:55 +00:00
Einar Ryeng
ae3aa7e4aa
Create Resnik distances and save them as ftsv.
2007-01-12 00:00:56 +00:00
Einar Ryeng
08b7d8dd85
Added function to save fluents tab separated values (ftsv) files.
2007-01-11 23:24:05 +00:00
Einar Ryeng
e4d7f8e5a2
Resnik distances between GO terms work now.
2007-01-11 22:01:31 +00:00
Einar Ryeng
Arnar Flatberg