Commit Graph

429 Commits

Author SHA1 Message Date
0523ebab05 Added dataset transpose option 2007-08-03 09:44:31 +00:00
e62a6ae9b3 Removed print statements 2007-08-02 14:51:53 +00:00
0758ab8bfb Fixed histogram plot to accept selections of one, and made ad-hoc choice of proportional color to patches 2007-08-02 14:37:19 +00:00
7a0e2481eb Full corrected X data 2007-08-02 11:22:05 +00:00
94f4b276b9 Fixed selection in DAG-plot to work both with and without IC set. 2007-08-02 11:20:30 +00:00
b334e94b15 New and corrected smokers data 2007-08-02 11:19:47 +00:00
438e7cb918 Irrelevant play 2007-08-02 11:19:16 +00:00
2d419a9862 Added GO-category enrichment analysis 2007-08-02 11:18:48 +00:00
973470b595 stuff 2007-08-02 11:18:18 +00:00
da5b977042 Moved less important datasets into a subfolder named "secondary". 2007-08-02 10:52:58 +00:00
83d76eac4f Fixed vorrect namespace for scipy funcs 2007-08-02 10:44:06 +00:00
b233e4abc6 Added spin buttons for minimum and maximum information content in DAG plot. 2007-08-02 10:20:33 +00:00
dc3893eecc Fixed a "main.project" bug 2007-08-02 10:19:16 +00:00
f12fe23c1b Fixed docstrings. 2007-08-02 10:08:52 +00:00
4c24061575 Fixed docstrings. 2007-08-02 10:08:27 +00:00
63d6347f37 Fixed makefile to not use lots of space on inherited function documentation. 2007-08-02 10:04:06 +00:00
6e4db7ebe4 Fixed plot focus signal problem. 2007-07-31 12:25:56 +00:00
10eba079bc iii 2007-07-30 18:04:42 +00:00
aa4007e208 Improved drag'n'drop of data into scatter plots so that it no longer requires
matching identifiers along dimensions.
2007-07-30 17:42:48 +00:00
0bc4a6e3f0 Fixed drag'n'drop of datasets to DAG-plots to convert inf/-inf to
maximum/minimum values of the dataset.
2007-07-30 14:15:23 +00:00
e84a202fbe Commented out unused functions. 2007-07-30 10:51:58 +00:00
50a6dae3f6 added full lpls data 2007-07-30 10:21:09 +00:00
b39e71ca2b Trying to fix cv_pls 2007-07-30 09:46:43 +00:00
9ccdf97d07 Changed filenames of information content datasets. 2007-07-30 07:55:36 +00:00
1e18ac81de Added names to datasets. 2007-07-30 07:54:22 +00:00
349cab3c51 ups 2007-07-28 16:05:11 +00:00
9a2e259209 c 2007-07-28 09:19:42 +00:00
df88f44255 clean up
ups
2007-07-28 09:18:48 +00:00
5cf34fc03f Added information content datasets.
They are in files named ICs<subgraph><number> where 
those numbered 0 uses all ECs while 5 uses only the safest ones.
2007-07-27 17:22:10 +00:00
4b8f594966 app -> main.application 2007-07-27 09:40:58 +00:00
47b89cc411 Fixed bug in esvd for m>n 2007-07-26 18:32:48 +00:00
7fd4ac6225 pls opt fix 2007-07-26 18:32:27 +00:00
b35f814ef0 Added center check button on lineview 2007-07-26 18:26:50 +00:00
dc7f7dbde2 Added existing_identifiers function to Dataset.
Added colouring drag'n'drop to DAGPlot in gobrowser module.
2007-07-26 15:45:42 +00:00
a45743c31e Added main.py that now contains the One & Only Singleton instance of these classes:
- Navigator
 - Aplication
 - Workflow
 - Project
 - Options
Corresponding changes have been added in lots of other files to account for this, but
the access to these objects should now be a lot easier.
2007-07-26 12:35:59 +00:00
91abf12f51 sd 2007-07-24 14:34:47 +00:00
13dc6de5c1 Name annotations to go-terms. 2007-07-24 13:34:40 +00:00
1d517d0754 Changed hardcoded absolute path to relative path. 2007-07-24 13:00:29 +00:00
524c90fcf7 Updated to handle new numpy/scipy. 2007-07-24 12:19:13 +00:00
05274b4f0b confidence 2007-07-23 18:07:10 +00:00
939dba20ee first import lpls 2007-07-23 17:35:28 +00:00
54d271b841 go test data 2007-07-23 17:35:04 +00:00
a05d0faa0d Lib updates 2007-07-23 17:33:21 +00:00
7ea87e646a Added DAG plot to gobrowser module and smokers workflow. 2007-07-23 17:02:28 +00:00
155dfada5c iups 2007-07-23 13:25:34 +00:00
9db5991108 2007-07-20 15:48:59 +00:00
98f53d3448 updates 2007-07-20 12:32:54 +00:00
7ee7aa968a Initial import 2007-07-20 09:36:26 +00:00
dd04e28a62 Query fix 2007-07-05 18:49:24 +00:00
850deeec0d Renamed gene identifers to gene_id 2007-07-05 18:40:29 +00:00