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144 Commits

Author SHA1 Message Date
Truls Alexander Tangstad 6c72dec7fa Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it. 2006-04-24 14:42:45 +00:00
Truls Alexander Tangstad b807f27874 Fixed deselection in scatterplot. 2006-04-24 14:28:30 +00:00
Truls Alexander Tangstad 3fb7d06f4e Fixed problem with plots accumulating. 2006-04-24 14:25:24 +00:00
Truls Alexander Tangstad 97e09b39a1 Added matrix-getter to Dataset. 
Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
 2006-04-24 14:07:34 +00:00
Truls Alexander Tangstad 2bddb22867 Fixed navigator after changes in Dataset. 2006-04-24 11:39:11 +00:00
Arnar Flatberg 6356e2ebd6 get_dim_names and get_identifiers added in dataset 2006-04-24 11:23:30 +00:00
Arnar Flatberg a2e4392a72 Complete rewrite of dataset class, with (all) the necessary updates 2006-04-24 09:53:07 +00:00
Einar Ryeng 53d0228074 * Added the full text of the GNU GPL. 2006-04-22 22:46:10 +00:00
Einar Ryeng e762aef882 * system/dialogs.py: Oooops. Forgot this file in the previous commits. Well, 
here it is, currently only with the New Project dialog.
 2006-04-22 22:29:02 +00:00
Einar Ryeng 2da88a5128 * Fixed a couple of menu items. 2006-04-22 21:56:30 +00:00
Einar Ryeng efcdafe843 * The New project toolbar button now works. A druid will display the 
available workflows and ask you to select one of them. There are still
   a couple of unresolved issues, but it works, so i upload it to ease
   the use of the program.
 2006-04-22 21:46:44 +00:00
Truls Alexander Tangstad d26dd54f5b Label verifier bugged when having generated labels. 2006-04-22 17:30:10 +00:00
Truls Alexander Tangstad e151e66898 Let log windows always follow changes/new entries. 2006-04-22 15:41:08 +00:00
Truls Alexander Tangstad c601ad3966 Removed data information as function in workflow and added as default action on datasets double-clicked in navigator. 2006-04-21 15:02:13 +00:00
Truls Alexander Tangstad 0918f0019b Adding plots to panes is now done in row_activated_handler again, which makes it respond to double-clicks instead of just being selected in navigator. 2006-04-21 14:59:25 +00:00
Truls Alexander Tangstad 832827bd5a Removed unused code. 2006-04-21 14:45:01 +00:00
Truls Alexander Tangstad 95eb78bf0d Use name of data in navigator. 2006-04-21 14:30:10 +00:00
Truls Alexander Tangstad f3a65a3c4f Can now select data in navigator by single-clicking or moving with keyboard, no need to activate (double-click etc.). 2006-04-21 14:29:08 +00:00
Truls Alexander Tangstad e4831ada13 Now can get and set name in Dataset. Also added getter for dim_names. 2006-04-21 12:28:29 +00:00
Truls Alexander Tangstad 33c9da117c Typo. 2006-04-21 10:56:56 +00:00
Arnar Flatberg fc4e62f799 current datset selection fix 2006-04-21 09:23:05 +00:00
Arnar Flatberg 7851048fb6 workflow update 2006-04-21 08:34:08 +00:00
Arnar Flatberg 2e53626393 s 2006-04-21 08:29:43 +00:00
Arnar Flatberg 800e7dc42e New pca workflow and datset updates 2006-04-20 15:30:29 +00:00
Einar Ryeng c09f2ceb92 * fluent, *.py: Data and plots returned from functions will now show up in 
the navigator window.
 2006-04-20 14:29:13 +00:00
Truls Alexander Tangstad 78ecadb3ab Fixed label of menu item. 2006-04-20 14:11:52 +00:00
Einar Ryeng f394610724 * fluent: removed old, non-working code. 2006-04-20 10:34:50 +00:00
Arnar Flatberg 6a4ae8ecf1 mainly overhaul of observers, and removal of project singleton 2006-04-20 10:27:58 +00:00
Einar Ryeng f45c9c6bf7 * fluent: General cleanup. 2006-04-19 19:59:55 +00:00
Arnar Flatberg 4541716f90 small fix 2006-04-19 19:26:14 +00:00
Arnar Flatberg 0eebd9436c object selection fix 2006-04-19 18:50:10 +00:00
Arnar Flatberg 56dac31529 Updated plots to demonstrate current selection update 2006-04-19 18:25:44 +00:00
Arnar Flatberg 1091bea0e9 category data and plot selection update| 2006-04-19 10:37:44 +00:00
Arnar Flatberg a8937ededb mainly play in plots 2006-04-18 14:25:46 +00:00
Arnar Flatberg 1d48bd85c5 added scatter 2006-04-18 09:19:59 +00:00
Einar Ryeng a0d2c0d16d * fluent, system/plots.py: Switching between four and one view now sort of 
works. Still a bit buggy, and with messy code.
 2006-04-17 22:30:53 +00:00
Einar Ryeng 494aedc1b5 * system/plots.py, system/fluent.glade: There is now an active plot. 2006-04-17 20:27:39 +00:00
Einar Ryeng 3668481562 * system/workflow.py: Loads and returns gene to GO term mapping. 2006-04-17 12:35:31 +00:00
Arnar Flatberg 2f2d54e5c8 op 2006-04-17 09:08:40 +00:00
Einar Ryeng adc3bf6bb1 * project.py: Added comments. 2006-04-17 00:29:00 +00:00
Einar Ryeng 4bdeef05f6 * annotations.py: The Annotations class now work. Querying along any 
axis is supported, but only two dimensional Annotations can be created.
 2006-04-16 23:30:01 +00:00
Arnar Flatberg 23fb12f53a First commit 2006-04-16 22:57:50 +00:00
Einar Ryeng eb45c125aa * annotations.py: Annotation class for two-way annotations. Does only support 
exactly two dimensions.
 2006-04-16 22:06:29 +00:00
Einar Ryeng 5853216df4 Initial import. 
* fluent: The application program.
 * system: The core system.
 * workflows: Directory for workflow modules.
 2006-04-16 18:25:54 +00:00