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Updated plots to demonstrate current selection update

This commit is contained in:
Arnar Flatberg 2006-04-19 18:25:44 +00:00
parent 1091bea0e9
commit 56dac31529
4 changed files with 51 additions and 24 deletions
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4
fluent
View File

@ -88,6 +88,10 @@ class FluentApp:
plot2 = plots.ScatterPlot()
plot2.show()
plot3 = plots.ScatterPlot()
plot3.show()
# pt.set_child(plot, 0, 1)
# Set up plot toolbar
dock = self.widget_tree.get_widget('plot_toolbar_dock')

6
system/navigator.py
View File

@ -16,6 +16,12 @@ class NavigatorStore (gtk.TreeStore):
self.set_value(iter, 0, ('Scatter Plot'))
self.set_value(iter, 1, (plots.ScatterPlot()))
iter = self.append(None)
self.set_value(iter, 0, ('Scatter Plot 2'))
self.set_value(iter, 1, (plots.ScatterPlot()))
def plot_at(self, path):
iter = self.get_iter(path)
plot = self.get_value(iter, 1)

55
system/plots.py
View File

@ -1,19 +1,17 @@
import logger
import pygtk
import gtk
import matplotlib
import scipy
import project
from matplotlib.backends.backend_gtkagg import FigureCanvasGTKAgg as FigureCanvas
from matplotlib.axes import Subplot
from matplotlib.figure import Figure
from matplotlib.numerix import arange, sin, pi
from matplotlib.backends.backend_gtk import NavigationToolbar2GTK as NavigationToolbar
from matplotlib.widgets import RectangleSelector
import scipy
import logger
import project
class MainView (gtk.Notebook):
def __init__(self):
@ -186,7 +184,7 @@ class Plot (gtk.Frame):
self.set_shadow_type(gtk.SHADOW_OUT)
def update_selection(self,project):
self.selection_object = project.get_selection()
pass
class EmptyView (Plot):
def __init__(self):
@ -235,21 +233,27 @@ class ScatterPlot (Plot):
Plot.__init__(self)
fig = Figure(figsize=(5,4), dpi=72)
self.ax = ax = fig.add_subplot(111)
self.x_dataset = project.c_p.datasets[0]
# testing testing
self.c_p = project.c_p
self.x_dataset = self.c_p.datasets[0]
x = self.x_dataset._data
self.xaxis_data = xaxis_data = x[:,0]
self.xaxis_data = xaxis_data = x[:,0] + scipy.randn(scipy.shape(x)[0])
self.yaxis_data = yaxis_data = x[:,1]
self.current_dim = self.x_dataset._dim_names[0]
ax.plot(xaxis_data,yaxis_data,'og')
###
self.canvas = FigureCanvas(fig)
self.add(self.canvas)
rectprops = dict(facecolor='blue', edgecolor = 'black',
alpha=0.2, fill=True)
sel = RectangleSelector(ax, self.line_select_callback,
rectprops = dict(facecolor='gray', edgecolor = 'black',
alpha=0.2, fill=True) #cool
sel = RectangleSelector(ax, self.rectangle_select_callback,
drawtype='box',useblit=True,rectprops=rectprops)
self.canvas.show()
def line_select_callback(self,event1, event2):
def rectangle_select_callback(self,event1, event2):
'event1 and event2 are the press and release events'
x1, y1 = event1.xdata, event1.ydata
x2, y2 = event2.xdata, event2.ydata
@ -259,28 +263,41 @@ class ScatterPlot (Plot):
ydata = self.yaxis_data
xdata = self.xaxis_data
if x1>x2:
logger.log('debug','Selection x_start bigger than x_end')
if y1<y2:
logger.log('debug','Selection y_start less than y_end')
index =scipy.nonzero((xdata<x1) & (xdata>x2) & (ydata>y1) & (ydata<y2))
else:
logger.log('debug','Selection y_start larger than y_end')
index =scipy.nonzero((xdata<x1) & (xdata>x2) & (ydata<y1) & (ydata>y2))
else:
logger.log('debug','Selection x_start less than x_end')
if y1<y2:
index =scipy.nonzero((xdata>x2) & (xdata<x1) & (ydata>y1) & (ydata<y2))
logger.log('debug','Selection y_start less than y_end')
index =scipy.nonzero((xdata>x1) & (xdata<x2) & (ydata>y1) & (ydata<y2))
else:
index =scipy.nonzero((xdata>x2) & (xdata<x1) & (ydata<y1) & (ydata>y2))
logger.log('debug','Selection y_start bigger than y_end')
index =scipy.nonzero((xdata>x1) & (xdata<x2) & (ydata<y1) & (ydata>y2))
if len(index)==0:
logger.log('debug','No points selected!')
else:
logger.log('debug','Selected:\n%s'%index)
ids = self.x_dataset.extract_id_from_index('samples',index)
#update selection object
self.c_p.set_selection(self.c_p.sel_obj,self.current_dim,ids)
logger.log('debug','Selected identifiers:\n%s'%ids)
xdata_new = scipy.take(xdata,index)
ydata_new = scipy.take(ydata,index)
# self.ax.plot(xdata,ydata,'og')
self.ax.plot(xdata_new,ydata_new,'or')
self.canvas.draw()
def update_selection(self,project):
curr_sel = project.get_selection(self.c_p.sel_obj)
ids = curr_sel[self.current_dim]
index = self.x_dataset.extract_index_from_id(self.current_dim,ids)
xdata_new = scipy.take(self.xaxis_data,index)
ydata_new = scipy.take(self.yaxis_data,index)
self.ax.plot(xdata_new,ydata_new,'or')
self.canvas.draw()
def get_toolbar(self, window):
self.toolbar = NavigationToolbar(self.canvas, window)
self.toolbar.set_property('show-arrow', False)

10
system/project.py
View File

@ -24,9 +24,9 @@ class Project:
def notify(self, modifier=None):
"""Notifies observers that selection is updated"""
for observer in self.selection_observers:
for observer in self._selection_observers:
if modifier != observer:
observer.update(self)
observer.update_selection(self)
def set_selection(self,sel_obj,dim_name,selection):
"""Sets selection and notifies observers"""
@ -48,7 +48,7 @@ class Project:
def suggest_dim_name(self,dim_name):
"""Creates an arbitrary unique name for a new dimension."""
if dim_name in self.dim_names:
while dim_name in self.dim_names:
dim_name = dim_name + "_t"
return dim_name
@ -61,8 +61,8 @@ def_list = [ ['samples',[]], ['genes',['a','b','c']] ]
test_data = dataset.Dataset(x,def_list)
c_p.add_dataset(test_data)
y = scipy.rand(2,2)
def_list = [ ['samples',['1','2']], ['yclasses',['C','N']] ]
y = scipy.rand(2000,2)
def_list = [ ['samples',[]], ['yclasses',['C','N']] ]
test_data = dataset.Dataset(y,def_list)
c_p.add_dataset(test_data)