Commit Graph

136 Commits

Author SHA1 Message Date
b39e71ca2b Trying to fix cv_pls 2007-07-30 09:46:43 +00:00
349cab3c51 ups 2007-07-28 16:05:11 +00:00
9a2e259209 c 2007-07-28 09:19:42 +00:00
df88f44255 clean up
ups
2007-07-28 09:18:48 +00:00
4b8f594966 app -> main.application 2007-07-27 09:40:58 +00:00
47b89cc411 Fixed bug in esvd for m>n 2007-07-26 18:32:48 +00:00
7fd4ac6225 pls opt fix 2007-07-26 18:32:27 +00:00
b35f814ef0 Added center check button on lineview 2007-07-26 18:26:50 +00:00
dc7f7dbde2 Added existing_identifiers function to Dataset.
Added colouring drag'n'drop to DAGPlot in gobrowser module.
2007-07-26 15:45:42 +00:00
a45743c31e Added main.py that now contains the One & Only Singleton instance of these classes:
- Navigator
 - Aplication
 - Workflow
 - Project
 - Options
Corresponding changes have been added in lots of other files to account for this, but
the access to these objects should now be a lot easier.
2007-07-26 12:35:59 +00:00
524c90fcf7 Updated to handle new numpy/scipy. 2007-07-24 12:19:13 +00:00
05274b4f0b confidence 2007-07-23 18:07:10 +00:00
a05d0faa0d Lib updates 2007-07-23 17:33:21 +00:00
a503ffcdf8 Fixed linewidth in selection in scatter plots. 2007-07-05 11:57:21 +00:00
d29013a863 T-test now works, and outputs a histogram as well as t-values and p-values. 2007-07-03 16:25:38 +00:00
99987999db Broke up a too long line. 2007-07-02 09:54:56 +00:00
4eaea2fe59 Added empty lists as default values for all_data and all_plots in Options, so
that subclasses of Options will work with the GUI without modifications.
2007-06-28 21:33:09 +00:00
68cc583d2c Added common_dimensions(ds) that lists common dimensions between two
datasets.
2007-06-22 15:35:45 +00:00
ff2c42902f Commented out some log lines that just cluttered the log. 2007-06-21 10:25:17 +00:00
ebe7621817 some biocondoctur utilities 2007-05-06 13:51:06 +00:00
a0faed2614 Forgot some ... 2007-04-24 17:21:40 +00:00
34ae426c86 Added correlation plot and moved colorbar to plots 2007-04-24 17:17:31 +00:00
90bb25eb55 added default mappable to None 2007-04-24 17:16:34 +00:00
31ac569c3e Added colorbar shortcut 2007-04-24 17:04:29 +00:00
b02773b4e6 pls loading plot now have correct name 2007-03-15 10:38:52 +00:00
1c48315a0f Added debug output. 2007-03-14 17:26:40 +00:00
438a268b1d Inserted visible header sort 2007-03-14 16:34:50 +00:00
3d2492578e whitespace 2007-03-14 16:33:54 +00:00
3bd21ab089 metric support 2007-03-14 16:33:16 +00:00
48047f1395 Moved lots of stuff back to sandbox 2007-03-14 16:32:49 +00:00
7f1f639ee7 Updates on metric, whitespace 2007-03-14 16:31:25 +00:00
22f6e3284c whitespace 2007-03-14 16:30:18 +00:00
818dc0b2b0 added a logger for constructor calls 2007-03-14 16:27:23 +00:00
212da78933 correct comp update 2007-03-14 16:17:21 +00:00
00dd3e8d9d added validation on identifiers input 2007-03-14 16:06:16 +00:00
9cbefb5705 in write_ftsv: adjusted so it splits specifically on tab, whitespace allowed in annotations 2007-03-14 10:24:49 +00:00
28e6c52f78 Fixed bug with hidden dimensions. 2007-03-01 15:06:33 +00:00
d699afa6a5 fixed bu when trying to drag anything over an empty view 2007-03-01 15:03:53 +00:00
6101bf850c Changed CategoryDataset ftsv files to be written with 0 and 1 instead of True and False. 2007-02-28 16:33:11 +00:00
89636962a7 Added Workflow.get_data_file_name() which returns the full path to a given
data file, or None if the file does not exist. This is tested in the test
workflow.
2007-02-28 14:56:24 +00:00
281337251d Added selection of lines in network plot 2007-02-27 21:19:24 +00:00
78183df0e9 Alignment of function boxes 2007-02-27 18:14:58 +00:00
b754a5df44 Update from change of plots/view 2007-02-27 16:31:18 +00:00
61cfd00558 Division of plots -> view/plots 2007-02-27 16:28:03 +00:00
059cddbc16 Division of plots -> view/plots 2007-02-27 16:27:39 +00:00
686a1fdcd1 network/venn plot now maximizes the space available 2007-02-27 15:42:27 +00:00
d27278241c oops ... (broken code fixed) 2007-02-27 15:08:00 +00:00
4de65f1085 Clean up 2007-02-27 15:05:21 +00:00
f73a6db0ee Added ctrl+arrows to navigate between plots. 2007-02-26 23:00:25 +00:00
eacb44f32a Removed "Edit" menu. 2007-02-26 22:12:32 +00:00