b17f04466b
Added read_annotations_file() which reads a tab delimited file containing
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annotations to identifiers along a dimension.
2007-02-15 22:42:55 +00:00
4319e8630e
fixed error in typechecking
2007-02-15 13:36:36 +00:00
fc33c2dbfc
factored out packer
2007-02-09 14:02:58 +00:00
15c89fb9b5
Factored out packer
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A packer.py
2007-02-09 14:02:39 +00:00
7eb13b14cb
Removed resolution arg to Circle to avoid construction of a circlepolygon (deprecated)
2007-02-02 12:21:19 +00:00
320cd97512
Removed noise generating print statements.
2007-01-31 14:58:37 +00:00
75b66914fd
Fixed bug by removing hardcoded filename.
2007-01-31 14:56:43 +00:00
74cb30428c
Added annotations to identifiers, and converted the unused annotationtest.py to
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test the new module.
2007-01-31 14:19:23 +00:00
1863bfc564
Save plot enabled
2007-01-31 13:26:46 +00:00
d1205ae67f
Removed colorbar
2007-01-31 13:01:09 +00:00
37feb1c25b
bugfix on P scale
2007-01-31 13:00:36 +00:00
2cfa3ca415
spin on a/o, colorbar on keypress
2007-01-31 12:59:21 +00:00
63be80aa92
pls options added
2007-01-31 12:03:11 +00:00
088f180b5d
Barplot, lots of changes in scatter, disabled modes, removed labels, bugfix on lasso
2007-01-31 12:02:11 +00:00
e716db3fd2
Added center option to validation, + naming updates
2007-01-31 11:59:23 +00:00
29509902df
bugfix on shape
2007-01-31 11:57:59 +00:00
8e607c7b1a
bugfixed scaling issues
2007-01-31 11:57:04 +00:00
f064b7134d
Removed scale option added pack
2007-01-31 11:56:28 +00:00
1d5929f14c
pls options glade file
2007-01-31 11:55:43 +00:00
ed2848beb3
Errors when identifers dont match shape, + whitespace
2007-01-31 11:54:54 +00:00
48bb47ec86
Bugfixed pca
2007-01-25 12:36:32 +00:00
aeb37cf4cd
Added supportp for tall X in PCA
2007-01-25 12:17:16 +00:00
fa3722600c
pca options glade file
2007-01-25 12:15:30 +00:00
61bfc236e6
Changed location of PCA options glade file.
2007-01-25 12:15:19 +00:00
7a204a3426
Added option page to option dialog
2007-01-25 12:10:18 +00:00
1c2c2c8895
Multiple lib changes
2007-01-25 11:58:10 +00:00
e03cc4ed4c
Added a ScrolledWindow around the navigator.
2007-01-19 14:00:10 +00:00
7693f336ba
Added a singleton project in the project module, so that the current project is
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easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.
The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors.
Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
f533344242
Added histogram in plot menu
2007-01-17 15:40:54 +00:00
7c20e6d780
Added simple histogram
2007-01-17 15:40:33 +00:00
1ffbf4f9e7
Added default implementation of set_current_selection in Plot, so that plots can safely
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ignore selections without adding any code to the plot.
Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
06591e301e
Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset.
2007-01-17 14:06:07 +00:00
c3c6e85044
Added ImagePlot, which displays a dataset as an image.
2007-01-17 13:20:04 +00:00
33c51505c4
Fixed the dataset loading so that it returns a correctly named Dataset.
2007-01-16 12:41:29 +00:00
f612dda72f
Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
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Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
ea4c0af6de
fixed shift/control on lasso
2007-01-15 15:46:24 +00:00
cacb0a27b7
Added "Save dataset" option to navigator context menu.
2007-01-15 13:58:56 +00:00
0a38cb7d4a
added lasso
2007-01-15 13:47:18 +00:00
ee447b688c
Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
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adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
08b7d8dd85
Added function to save fluents tab separated values (ftsv) files.
2007-01-11 23:24:05 +00:00
3340b1b7ac
Added support for union/intersection selections
2007-01-11 13:07:54 +00:00
9274b044b7
Added read_ftsv in dataset.py. This method reads fluents tab separated values
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files and returns a dataset.
2007-01-10 17:35:58 +00:00
6f050d4f10
Fixed error in docstring.
2007-01-08 19:31:19 +00:00
1371bc1b1a
Added function menu. Clicking the items still does not work, though.
2007-01-05 14:42:22 +00:00
f7fe171896
Added Optionsdialog for pca and pls
2007-01-04 13:53:47 +00:00
e08a8377ed
Added Options and OptionsDialog
2007-01-04 13:53:03 +00:00
ebd4fdae7b
Changed all places that load icons to do it through IconFactory.
2007-01-03 17:30:27 +00:00
57e58e3910
Renamed IconFactory.get_icon() -> IconFactory.get()
2007-01-03 13:46:39 +00:00
d45ae4f480
Added icon factory to ensure that all icons are loaded exactly once. This also
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cleans up code and saves X pixmap memory.
2007-01-03 13:34:40 +00:00
75447d8840
Fixed function output bug. Datasets now appear as children of their first parent, also in gtk 2.10
2007-01-03 13:05:37 +00:00
