Arnar Flatberg
15c89fb9b5
Factored out packer
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A packer.py
2007-02-09 14:02:39 +00:00
Arnar Flatberg
7eb13b14cb
Removed resolution arg to Circle to avoid construction of a circlepolygon (deprecated)
2007-02-02 12:21:19 +00:00
Einar Ryeng
320cd97512
Removed noise generating print statements.
2007-01-31 14:58:37 +00:00
Einar Ryeng
75b66914fd
Fixed bug by removing hardcoded filename.
2007-01-31 14:56:43 +00:00
Einar Ryeng
74cb30428c
Added annotations to identifiers, and converted the unused annotationtest.py to
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test the new module.
2007-01-31 14:19:23 +00:00
Arnar Flatberg
1863bfc564
Save plot enabled
2007-01-31 13:26:46 +00:00
Arnar Flatberg
d1205ae67f
Removed colorbar
2007-01-31 13:01:09 +00:00
Arnar Flatberg
37feb1c25b
bugfix on P scale
2007-01-31 13:00:36 +00:00
Arnar Flatberg
2cfa3ca415
spin on a/o, colorbar on keypress
2007-01-31 12:59:21 +00:00
Arnar Flatberg
63be80aa92
pls options added
2007-01-31 12:03:11 +00:00
Arnar Flatberg
088f180b5d
Barplot, lots of changes in scatter, disabled modes, removed labels, bugfix on lasso
2007-01-31 12:02:11 +00:00
Arnar Flatberg
e716db3fd2
Added center option to validation, + naming updates
2007-01-31 11:59:23 +00:00
Arnar Flatberg
29509902df
bugfix on shape
2007-01-31 11:57:59 +00:00
Arnar Flatberg
8e607c7b1a
bugfixed scaling issues
2007-01-31 11:57:04 +00:00
Arnar Flatberg
f064b7134d
Removed scale option added pack
2007-01-31 11:56:28 +00:00
Arnar Flatberg
1d5929f14c
pls options glade file
2007-01-31 11:55:43 +00:00
Arnar Flatberg
ed2848beb3
Errors when identifers dont match shape, + whitespace
2007-01-31 11:54:54 +00:00
Arnar Flatberg
48bb47ec86
Bugfixed pca
2007-01-25 12:36:32 +00:00
Arnar Flatberg
aeb37cf4cd
Added supportp for tall X in PCA
2007-01-25 12:17:16 +00:00
Arnar Flatberg
fa3722600c
pca options glade file
2007-01-25 12:15:30 +00:00
Einar Ryeng
61bfc236e6
Changed location of PCA options glade file.
2007-01-25 12:15:19 +00:00
Arnar Flatberg
7a204a3426
Added option page to option dialog
2007-01-25 12:10:18 +00:00
Arnar Flatberg
1c2c2c8895
Multiple lib changes
2007-01-25 11:58:10 +00:00
Einar Ryeng
e03cc4ed4c
Added a ScrolledWindow around the navigator.
2007-01-19 14:00:10 +00:00
Einar Ryeng
7693f336ba
Added a singleton project in the project module, so that the current project is
...
easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.
The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors.
Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
Arnar Flatberg
f533344242
Added histogram in plot menu
2007-01-17 15:40:54 +00:00
Arnar Flatberg
7c20e6d780
Added simple histogram
2007-01-17 15:40:33 +00:00
Einar Ryeng
1ffbf4f9e7
Added default implementation of set_current_selection in Plot, so that plots can safely
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ignore selections without adding any code to the plot.
Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
Einar Ryeng
06591e301e
Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset.
2007-01-17 14:06:07 +00:00
Einar Ryeng
c3c6e85044
Added ImagePlot, which displays a dataset as an image.
2007-01-17 13:20:04 +00:00
Einar Ryeng
33c51505c4
Fixed the dataset loading so that it returns a correctly named Dataset.
2007-01-16 12:41:29 +00:00
Einar Ryeng
f612dda72f
Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
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Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
Arnar Flatberg
ea4c0af6de
fixed shift/control on lasso
2007-01-15 15:46:24 +00:00
Einar Ryeng
cacb0a27b7
Added "Save dataset" option to navigator context menu.
2007-01-15 13:58:56 +00:00
Arnar Flatberg
0a38cb7d4a
added lasso
2007-01-15 13:47:18 +00:00
Einar Ryeng
ee447b688c
Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
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adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
Einar Ryeng
08b7d8dd85
Added function to save fluents tab separated values (ftsv) files.
2007-01-11 23:24:05 +00:00
Arnar Flatberg
3340b1b7ac
Added support for union/intersection selections
2007-01-11 13:07:54 +00:00
Einar Ryeng
9274b044b7
Added read_ftsv in dataset.py. This method reads fluents tab separated values
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files and returns a dataset.
2007-01-10 17:35:58 +00:00
Einar Ryeng
6f050d4f10
Fixed error in docstring.
2007-01-08 19:31:19 +00:00
Einar Ryeng
1371bc1b1a
Added function menu. Clicking the items still does not work, though.
2007-01-05 14:42:22 +00:00
Arnar Flatberg
f7fe171896
Added Optionsdialog for pca and pls
2007-01-04 13:53:47 +00:00
Arnar Flatberg
e08a8377ed
Added Options and OptionsDialog
2007-01-04 13:53:03 +00:00
Einar Ryeng
ebd4fdae7b
Changed all places that load icons to do it through IconFactory.
2007-01-03 17:30:27 +00:00
Einar Ryeng
57e58e3910
Renamed IconFactory.get_icon() -> IconFactory.get()
2007-01-03 13:46:39 +00:00
Einar Ryeng
d45ae4f480
Added icon factory to ensure that all icons are loaded exactly once. This also
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cleans up code and saves X pixmap memory.
2007-01-03 13:34:40 +00:00
Einar Ryeng
75447d8840
Fixed function output bug. Datasets now appear as children of their first parent, also in gtk 2.10
2007-01-03 13:05:37 +00:00
Arnar Flatberg
c34f23190b
init
2007-01-02 15:10:59 +00:00
Arnar Flatberg
3ef5522dd0
First import of chemometrics utils
2006-12-18 11:59:12 +00:00
Arnar Flatberg
6aa1a1a817
Code upgraded to adjust for new version of networkx
2006-11-24 13:29:09 +00:00
Einar Ryeng
880509f8a9
Removed whitespace that broke plots.
2006-10-31 14:35:12 +00:00
Arnar Flatberg
438dbd358b
Dataset to colour of dragndrop in dataset + minor addjustments in networkplot
2006-10-25 12:56:21 +00:00
Einar Ryeng
1f9a400057
Added docstrings.
2006-10-17 17:50:42 +00:00
Einar Ryeng
f7ededa451
Removed executable bit.
2006-10-17 17:50:18 +00:00
Einar Ryeng
fe96772319
Expanded some documentation.
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Added clean target to doc Makefile.
2006-10-17 17:18:46 +00:00
Einar Ryeng
fb3d9f2050
Added documentation directory with a Makefile to generate source code
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documentation. This adds python-epydoc as a build dependency.
2006-10-17 15:06:24 +00:00
Einar Ryeng
375d45e0cc
Updated import statements, and removed the workflows pca_workflow and
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affy_workflow.
2006-10-17 14:42:27 +00:00
Einar Ryeng
610812f265
Started to rename "system" package to "fluents". Repository will be broken
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until this is completed.
2006-10-17 14:28:35 +00:00
Einar Ryeng
eefbc438bc
The application is now a singleton. Added button to choose numer of
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plots.
2006-10-16 19:57:40 +00:00
Einar Ryeng
959d114774
Changed from using default python version to python2.4 to make the
...
program work on debian systems. The program does not currently support
python 2.3, and probably never will because of the set class that is a built-in
only from python 2.4 and up.
2006-04-27 10:06:30 +00:00
Einar Ryeng
3e5be133ad
Fixed the fluents -l bug.
2006-04-25 12:36:38 +00:00
Einar Ryeng
251f9d6cf4
Added command line options to create a new project based on a given workflow.
2006-04-25 12:19:25 +00:00
Arnar Flatberg
Einar Ryeng