Arnar Flatberg
d510e092e3
Added SAM and conditioned enrichment analysis
2007-08-14 16:16:31 +00:00
Arnar Flatberg
8d4848d5fa
Added explained variance
2007-08-14 16:12:28 +00:00
Arnar Flatberg
004cfe0a9f
Quick fix for gray on NaNs
2007-08-14 16:10:35 +00:00
Einar Ryeng
13b35180ee
Fixed bug in DAG plot color mapping.
2007-08-08 12:24:14 +00:00
Einar Ryeng
e08dba0924
read_ftsv and write_ftsv now supports filenames as well as file descriptors.
2007-08-08 12:23:45 +00:00
Einar Ryeng
04126e9c83
New information content datasets.
2007-08-08 10:13:05 +00:00
Arnar Flatberg
46c2a0c149
New calculations (Z), based on updated X data
2007-08-07 11:45:16 +00:00
Arnar Flatberg
916fc4c046
Added scaling to navigator menu, moved transformations to a separate sub menu
2007-08-07 11:42:07 +00:00
Arnar Flatberg
168384f266
Cleaned esvd routine, added subfunc scale
2007-08-07 11:41:03 +00:00
Arnar Flatberg
d055a1f882
Some .....
2007-08-07 11:39:16 +00:00
Einar Ryeng
4b80baf225
Added information content drag'n'drop to z loadings plot.
2007-08-06 16:20:39 +00:00
Arnar Flatberg
72e300c95e
Addded automatic bin selection in histogram plot
2007-08-04 10:37:22 +00:00
Einar Ryeng
3f7215bc35
Factored out a mixin class for IC thresholding.
2007-08-03 12:09:17 +00:00
Arnar Flatberg
0523ebab05
Added dataset transpose option
2007-08-03 09:44:31 +00:00
Arnar Flatberg
e62a6ae9b3
Removed print statements
2007-08-02 14:51:53 +00:00
Arnar Flatberg
0758ab8bfb
Fixed histogram plot to accept selections of one, and made ad-hoc choice of proportional color to patches
2007-08-02 14:37:19 +00:00
Arnar Flatberg
7a0e2481eb
Full corrected X data
2007-08-02 11:22:05 +00:00
Einar Ryeng
94f4b276b9
Fixed selection in DAG-plot to work both with and without IC set.
2007-08-02 11:20:30 +00:00
Arnar Flatberg
b334e94b15
New and corrected smokers data
2007-08-02 11:19:47 +00:00
Arnar Flatberg
438e7cb918
Irrelevant play
2007-08-02 11:19:16 +00:00
Arnar Flatberg
2d419a9862
Added GO-category enrichment analysis
2007-08-02 11:18:48 +00:00
Arnar Flatberg
973470b595
stuff
2007-08-02 11:18:18 +00:00
Einar Ryeng
da5b977042
Moved less important datasets into a subfolder named "secondary".
2007-08-02 10:52:58 +00:00
Arnar Flatberg
83d76eac4f
Fixed vorrect namespace for scipy funcs
2007-08-02 10:44:06 +00:00
Einar Ryeng
b233e4abc6
Added spin buttons for minimum and maximum information content in DAG plot.
2007-08-02 10:20:33 +00:00
Arnar Flatberg
dc3893eecc
Fixed a "main.project" bug
2007-08-02 10:19:16 +00:00
Einar Ryeng
f12fe23c1b
Fixed docstrings.
2007-08-02 10:08:52 +00:00
Einar Ryeng
4c24061575
Fixed docstrings.
2007-08-02 10:08:27 +00:00
Einar Ryeng
63d6347f37
Fixed makefile to not use lots of space on inherited function documentation.
2007-08-02 10:04:06 +00:00
Einar Ryeng
6e4db7ebe4
Fixed plot focus signal problem.
2007-07-31 12:25:56 +00:00
Arnar Flatberg
10eba079bc
iii
2007-07-30 18:04:42 +00:00
Einar Ryeng
aa4007e208
Improved drag'n'drop of data into scatter plots so that it no longer requires
...
matching identifiers along dimensions.
2007-07-30 17:42:48 +00:00
Einar Ryeng
0bc4a6e3f0
Fixed drag'n'drop of datasets to DAG-plots to convert inf/-inf to
...
maximum/minimum values of the dataset.
2007-07-30 14:15:23 +00:00
Einar Ryeng
e84a202fbe
Commented out unused functions.
2007-07-30 10:51:58 +00:00
Arnar Flatberg
50a6dae3f6
added full lpls data
2007-07-30 10:21:09 +00:00
Arnar Flatberg
b39e71ca2b
Trying to fix cv_pls
2007-07-30 09:46:43 +00:00
Einar Ryeng
9ccdf97d07
Changed filenames of information content datasets.
2007-07-30 07:55:36 +00:00
Einar Ryeng
1e18ac81de
Added names to datasets.
2007-07-30 07:54:22 +00:00
Arnar Flatberg
349cab3c51
ups
2007-07-28 16:05:11 +00:00
Arnar Flatberg
9a2e259209
c
2007-07-28 09:19:42 +00:00
Arnar Flatberg
df88f44255
clean up
...
ups
2007-07-28 09:18:48 +00:00
Einar Ryeng
5cf34fc03f
Added information content datasets.
...
They are in files named ICs<subgraph><number> where
those numbered 0 uses all ECs while 5 uses only the safest ones.
2007-07-27 17:22:10 +00:00
Arnar Flatberg
4b8f594966
app -> main.application
2007-07-27 09:40:58 +00:00
Arnar Flatberg
47b89cc411
Fixed bug in esvd for m>n
2007-07-26 18:32:48 +00:00
Arnar Flatberg
7fd4ac6225
pls opt fix
2007-07-26 18:32:27 +00:00
Arnar Flatberg
b35f814ef0
Added center check button on lineview
2007-07-26 18:26:50 +00:00
Einar Ryeng
dc7f7dbde2
Added existing_identifiers function to Dataset.
...
Added colouring drag'n'drop to DAGPlot in gobrowser module.
2007-07-26 15:45:42 +00:00
Einar Ryeng
a45743c31e
Added main.py that now contains the One & Only Singleton instance of these classes:
...
- Navigator
- Aplication
- Workflow
- Project
- Options
Corresponding changes have been added in lots of other files to account for this, but
the access to these objects should now be a lot easier.
2007-07-26 12:35:59 +00:00
Arnar Flatberg
91abf12f51
sd
2007-07-24 14:34:47 +00:00
Einar Ryeng
13dc6de5c1
Name annotations to go-terms.
2007-07-24 13:34:40 +00:00
Arnar Flatberg
Einar Ryeng