Commit Graph

496 Commits

Author SHA1 Message Date
ab9c1ec84b Sparse network support and nodepos read/write 2008-01-08 00:43:56 +00:00
bf29661af9 Added convertion to sparse format in category dataset 2008-01-07 13:13:27 +00:00
e6625c975f bugfix 2008-01-07 12:44:08 +00:00
ca267920d8 Removed a couple of output datasets that did not work from pls. 2008-01-07 10:47:17 +00:00
bed280353b Added support for sparse category-dataset 2008-01-06 17:01:00 +00:00
a84731da30 Support for icon assignment based on introspection 2007-12-17 18:52:49 +00:00
163271fc17 Correct behavior of dataset icons and names under transformations 2007-12-17 18:50:27 +00:00
083702b3b1 Fixed bug in color updating 2007-12-15 14:50:33 +00:00
e80440472d Fixed axes scaling error in scatterplot 2007-12-14 17:27:12 +00:00
4de9a58ae9 Made a LoadDataFunction instead of four almost identical specialiced Funcions. 2007-12-14 16:45:05 +00:00
07477888bb Fixed colormap bug 2007-12-14 15:43:35 +00:00
5c2df5c163 Removed get_project nonsense 2007-12-14 15:42:37 +00:00
6996aab2fa Added log transform, support for multi selections in navigator-scatter, removed get_project-nonsense 2007-12-14 15:42:17 +00:00
a94c3ed1cc Smoker workflow now loads data from correct path. 2007-12-14 15:15:01 +00:00
ba7d8fc34f Changed the way workflows are handled. You now specify a workflow by naming the
containing python module. The module must be in python's path.
2007-12-14 11:48:21 +00:00
0e8d864ace Does not need to import workflows. 2007-12-14 11:46:08 +00:00
7600abf372 Deleted all datasets. They don't belong here. 2007-12-12 17:02:28 +00:00
05cf63e694 Removes rpy, forcing scipy to be used. 2007-12-12 14:41:27 +00:00
455b2a7a86 Small fixes to setup.py and rules. 2007-12-11 19:49:36 +00:00
1798279a32 Files to debianize the program. 2007-12-11 18:26:47 +00:00
6379acca58 Added setup.py to do installation. 2007-12-11 18:25:08 +00:00
cef882b0a4 * Annotations are no longer cluttered as if they all belong to the same
dimension. There was a bug that actually gave the same annotation dictionary
   to all dictionary annotation handlers.
 * The selection window now remembers which annotation was shown for each
   dimension.
2007-12-11 13:47:29 +00:00
c862c8bb04 Added function to specify a specific workflow based on module name. 2007-12-11 11:40:27 +00:00
9242b88d07 Removed buttons that do not belong on the toolbar: "New", "Load", "Save".
Load and save are currently not implemented anyway, but they do not represent
frequently used actions anyway.
2007-12-11 10:13:31 +00:00
90c84b768a Changed help URLs. 2007-12-11 01:11:13 +00:00
057e2a9f1d About to change the way logging is normally called. 2007-12-11 01:02:47 +00:00
d0a7b1cbc2 Code cleanup. 2007-12-11 00:13:26 +00:00
055c0ea4ac Dataset dimensions are shown in statusbar. 2007-12-10 21:08:09 +00:00
1a4d73f26b Fixed the function menu. It now works, is placed before "Help", and the method
for running a function is moved to the workflow module instead of being hidden the
WorkflowView.
2007-12-10 16:57:38 +00:00
82dacc3dd1 Added menu items to toggle visibility of workflow, navigator and infopane. 2007-12-06 00:20:42 +00:00
27d935319c Added a delete function to the context menu on navigator elements. 2007-11-09 15:02:32 +00:00
c26999e688 Added line plot of matrices. 2007-11-08 11:47:36 +00:00
7ee7f0cf7e Added scatter plotting from dataset in navigator. 2007-11-07 12:44:22 +00:00
aef2e1daf0 Tralala ... 2007-11-07 12:34:13 +00:00
ca51a0b382 Added mat2ftsv to naïvely convert matlab matrices to ftsv files. Works in at
least one case, but does not try to guess anything sensible for identifiers.
2007-10-31 17:43:02 +00:00
b114d5aeec New crossval index generator 2007-09-25 06:31:40 +00:00
18f33decc7 Finnished the l-pls fdr 2007-09-21 13:16:40 +00:00
6698ebe932 Removed actiavtion in dimcontroller
opt. of compare func
2007-09-20 16:12:58 +00:00
41f93c5989 .... 2007-09-20 16:11:37 +00:00
7e9a0882f1 Updates 2007-09-20 16:10:40 +00:00
d9e5398865 GO (id, description, definition, ontology) 2007-08-28 09:39:24 +00:00
16ed2fd9c9 u 2007-08-24 11:48:29 +00:00
dc43830752 HS-entrez annotations 2007-08-24 09:15:16 +00:00
7dbf28f65d ... just lots of stuff 2007-08-24 09:14:24 +00:00
21b63b17e5 Fixed axis bug in barplot 2007-08-24 09:13:34 +00:00
7538710144 Enabled tree lines and set sensitivity on transforms 2007-08-24 09:12:52 +00:00
fa4604dbe5 load dataset defaults to datadir 2007-08-22 14:05:51 +00:00
01ef4bdedd Added support for identifiers sorting, and selection 2007-08-22 13:41:04 +00:00
ffe1ce6319 Fixed queries 2007-08-22 13:40:33 +00:00
6ba8c6eb67 ups 2007-08-21 10:31:09 +00:00