Commit Graph

289 Commits

Author SHA1 Message Date
a614908436 Size of current selection is now updated in details 2007-02-23 11:12:03 +00:00
41e8ed511b Fixed dim_cursor_changed to to use the correct treemodel, and added show/hide on selection details 2007-02-23 10:46:04 +00:00
0d8702bb71 added show/hide on dimensions 2007-02-21 19:57:27 +00:00
2bae169f38 Annotation display now works (sort of). 2007-02-21 16:39:04 +00:00
28aca8c621 added project to selection controller 2007-02-21 13:57:48 +00:00
8c03338b75 hypergeometric test (scipy version has errors) 2007-02-21 13:03:51 +00:00
48165d1aed Updated the selection controller with sorting ++ 2007-02-21 12:41:37 +00:00
f0b2660813 Selection listeners are now notified when new dimensions are added (because
this implies that an empty selection is made on the new dimension).
2007-02-21 12:05:08 +00:00
5800e7e362 Fixed a bug that prevented the first selection on a dimension to come from a
dataset.
2007-02-21 11:49:43 +00:00
a5955f9b59 Now updates the DimListConroller when a CategoryDataset is drag'n'dropped into
SelectionListController.
2007-02-21 11:43:00 +00:00
c5c4f13a19 Fixed some excessively long lines. 2007-02-21 11:08:20 +00:00
2cc4e86b0a Split selections.py into three different controller classes, one for each list. There
is still some work to be done, and bugs to be fixed.
2007-02-21 00:00:26 +00:00
a2195bcb4b Added Import annotations option. 2007-02-16 11:23:29 +00:00
93a2f404d2 Data needed if annotationtest should run clean. 2007-02-15 23:09:49 +00:00
6809c1a454 Added some annotation support in selections.py, including the beginning of a
menu option to add an arbitrary annotation alongside identifiers.
2007-02-15 22:57:40 +00:00
953662e1fb Added a couple of more assertions to the test of read_annotations_file() 2007-02-15 22:54:08 +00:00
e6cf8f765a Added read_annotations_file() 2007-02-15 22:49:40 +00:00
b17f04466b Added read_annotations_file() which reads a tab delimited file containing
annotations to identifiers along a dimension.
2007-02-15 22:42:55 +00:00
4319e8630e fixed error in typechecking 2007-02-15 13:36:36 +00:00
fc33c2dbfc factored out packer 2007-02-09 14:02:58 +00:00
15c89fb9b5 Factored out packer
A    packer.py
2007-02-09 14:02:39 +00:00
7eb13b14cb Removed resolution arg to Circle to avoid construction of a circlepolygon (deprecated) 2007-02-02 12:21:19 +00:00
320cd97512 Removed noise generating print statements. 2007-01-31 14:58:37 +00:00
75b66914fd Fixed bug by removing hardcoded filename. 2007-01-31 14:56:43 +00:00
74cb30428c Added annotations to identifiers, and converted the unused annotationtest.py to
test the new module.
2007-01-31 14:19:23 +00:00
1863bfc564 Save plot enabled 2007-01-31 13:26:46 +00:00
a7c60ffe64 added venn diagram test plot 2007-01-31 13:03:27 +00:00
240b0a4a9f New lasso icon 2007-01-31 13:02:25 +00:00
d1205ae67f Removed colorbar 2007-01-31 13:01:09 +00:00
37feb1c25b bugfix on P scale 2007-01-31 13:00:36 +00:00
2cfa3ca415 spin on a/o, colorbar on keypress 2007-01-31 12:59:21 +00:00
63be80aa92 pls options added 2007-01-31 12:03:11 +00:00
088f180b5d Barplot, lots of changes in scatter, disabled modes, removed labels, bugfix on lasso 2007-01-31 12:02:11 +00:00
e716db3fd2 Added center option to validation, + naming updates 2007-01-31 11:59:23 +00:00
29509902df bugfix on shape 2007-01-31 11:57:59 +00:00
8e607c7b1a bugfixed scaling issues 2007-01-31 11:57:04 +00:00
f064b7134d Removed scale option added pack 2007-01-31 11:56:28 +00:00
1d5929f14c pls options glade file 2007-01-31 11:55:43 +00:00
ed2848beb3 Errors when identifers dont match shape, + whitespace 2007-01-31 11:54:54 +00:00
48bb47ec86 Bugfixed pca 2007-01-25 12:36:32 +00:00
aeb37cf4cd Added supportp for tall X in PCA 2007-01-25 12:17:16 +00:00
fa3722600c pca options glade file 2007-01-25 12:15:30 +00:00
61bfc236e6 Changed location of PCA options glade file. 2007-01-25 12:15:19 +00:00
7a204a3426 Added option page to option dialog 2007-01-25 12:10:18 +00:00
1c2c2c8895 Multiple lib changes 2007-01-25 11:58:10 +00:00
a65d79697f Added Expand/Collapse menu choices to the GO browser context menu. This is
particularly useful when searching for GO terms, because the gtk TreeView
widget does not do interactive search in collapsed parts of the tree.
2007-01-21 16:16:37 +00:00
e03cc4ed4c Added a ScrolledWindow around the navigator. 2007-01-19 14:00:10 +00:00
7693f336ba Added a singleton project in the project module, so that the current project is
easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.

The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors. 

Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
f533344242 Added histogram in plot menu 2007-01-17 15:40:54 +00:00
7c20e6d780 Added simple histogram 2007-01-17 15:40:33 +00:00