 Einar Ryeng
|
fefaffb2e3
|
go-distance seems to be able to calculate resnik now. Not asserted with
calculations by hand.
|
2007-04-04 19:08:50 +00:00 |
|
Einar Ryeng
|
28f0f53e8a
|
go-distance script soon calculating resnik distances.
|
2007-04-03 13:08:48 +00:00 |
|
Einar Ryeng
|
a5c3a1f154
|
A couple of extra lines of code in a script.
|
2007-03-27 13:02:22 +00:00 |
|
Einar Ryeng
|
728c334e8a
|
ontology distance script now accumulates annotations correctly.
|
2007-03-26 23:15:14 +00:00 |
|
Einar Ryeng
|
11eb3306b9
|
Works a bit better.
|
2007-03-26 17:18:26 +00:00 |
 Arnar Flatberg
|
947cf8385f
|
Annotations on yeast from Stanford mdb.
|
2007-03-23 20:51:04 +00:00 |
|
Einar Ryeng
|
0904a59310
|
Gene ontolgy distance script in C. Will hopefully speed up calculations when
finished.
|
2007-03-23 13:25:07 +00:00 |
|
Arnar Flatberg
|
6f19fe1b4b
|
Resnick distance matrix
|
2007-03-16 17:05:46 +00:00 |
|
Einar Ryeng
|
0eff457910
|
Added biological process info to the small smokers example, and a README file to
explain the dataset, at least the non-trivial parts.
|
2007-03-15 23:57:35 +00:00 |
|
Einar Ryeng
|
3dc1867be4
|
Added entrez-go-mapping that maps entrez IDs to GO terms based on a file of the form:
affy_id ::: geneid_1 /// geneid_2 ::: go(bp) ::: go(cc) ::: go(mf)
|
2007-03-15 23:47:24 +00:00 |
|
Einar Ryeng
|
6fe4ff3c59
|
Added scripts folder for small but useful scripts.
|
2007-03-15 12:46:41 +00:00 |
|
Arnar Flatberg
|
b02773b4e6
|
pls loading plot now have correct name
|
2007-03-15 10:38:52 +00:00 |
|
Arnar Flatberg
|
dbe49b366d
|
added import of networkx
|
2007-03-15 10:38:05 +00:00 |
|
Einar Ryeng
|
f6696dfacc
|
Added gobrowser to smalltest workflow.
|
2007-03-14 21:08:56 +00:00 |
|
Einar Ryeng
|
1c48315a0f
|
Added debug output.
|
2007-03-14 17:26:40 +00:00 |
|
Arnar Flatberg
|
438a268b1d
|
Inserted visible header sort
|
2007-03-14 16:34:50 +00:00 |
|
Arnar Flatberg
|
3d2492578e
|
whitespace
|
2007-03-14 16:33:54 +00:00 |
|
Arnar Flatberg
|
3bd21ab089
|
metric support
|
2007-03-14 16:33:16 +00:00 |
|
Arnar Flatberg
|
48047f1395
|
Moved lots of stuff back to sandbox
|
2007-03-14 16:32:49 +00:00 |
|
Arnar Flatberg
|
7f1f639ee7
|
Updates on metric, whitespace
|
2007-03-14 16:31:25 +00:00 |
|
Arnar Flatberg
|
22f6e3284c
|
whitespace
|
2007-03-14 16:30:18 +00:00 |
|
Arnar Flatberg
|
818dc0b2b0
|
added a logger for constructor calls
|
2007-03-14 16:27:23 +00:00 |
|
Arnar Flatberg
|
212da78933
|
correct comp update
|
2007-03-14 16:17:21 +00:00 |
|
Arnar Flatberg
|
00dd3e8d9d
|
added validation on identifiers input
|
2007-03-14 16:06:16 +00:00 |
|
Arnar Flatberg
|
51435d9fdc
|
Fixed dataset type to network
|
2007-03-14 10:27:08 +00:00 |
|
Arnar Flatberg
|
ac447546a2
|
Annotation file for dim: gene_id
|
2007-03-14 10:26:11 +00:00 |
|
Arnar Flatberg
|
a9981779a6
|
network of articles
|
2007-03-14 10:25:35 +00:00 |
|
Arnar Flatberg
|
9cbefb5705
|
in write_ftsv: adjusted so it splits specifically on tab, whitespace allowed in annotations
|
2007-03-14 10:24:49 +00:00 |
|
Arnar Flatberg
|
6cbf6d0689
|
Initial commit of small example test workflow
|
2007-03-13 15:24:20 +00:00 |
|
Einar Ryeng
|
6b2737efb9
|
Added a line.
|
2007-03-09 14:33:09 +00:00 |
|
Einar Ryeng
|
f61bc353a9
|
Typofix
|
2007-03-09 14:30:40 +00:00 |
|
Arnar Flatberg
|
5be2f1faf6
|
Initial import of Iris data
|
2007-03-04 21:00:39 +00:00 |
|
Einar Ryeng
|
ae9a207a71
|
Added a tag column in the GO browser to help link it to selections.
|
2007-03-01 19:13:13 +00:00 |
|
Einar Ryeng
|
442b5fed5f
|
Moved all files to the smokers-small subdirectory.
|
2007-03-01 19:12:40 +00:00 |
|
Einar Ryeng
|
f31795ac2a
|
Corrected erroneous checkin.
|
2007-03-01 15:27:50 +00:00 |
|
Einar Ryeng
|
e01dd578cd
|
Preserves PYTHONPATH
|
2007-03-01 15:27:24 +00:00 |
|
Einar Ryeng
|
ff070e5312
|
Preserves PYTHONPATH.
|
2007-03-01 15:26:38 +00:00 |
|
Einar Ryeng
|
28e6c52f78
|
Fixed bug with hidden dimensions.
|
2007-03-01 15:06:33 +00:00 |
|
Arnar Flatberg
|
d699afa6a5
|
fixed bu when trying to drag anything over an empty view
|
2007-03-01 15:03:53 +00:00 |
|
Arnar Flatberg
|
f8f3bd712e
|
Smoker example data
|
2007-03-01 15:01:30 +00:00 |
|
Einar Ryeng
|
6101bf850c
|
Changed CategoryDataset ftsv files to be written with 0 and 1 instead of True and False.
|
2007-02-28 16:33:11 +00:00 |
|
Einar Ryeng
|
89636962a7
|
Added Workflow.get_data_file_name() which returns the full path to a given
data file, or None if the file does not exist. This is tested in the test
workflow.
|
2007-02-28 14:56:24 +00:00 |
|
Einar Ryeng
|
934640ea62
|
Searches for /etc/fluentsrc and ~/.fluents configuration files. Adds the
home configuration variable.
|
2007-02-28 14:07:33 +00:00 |
|
Arnar Flatberg
|
281337251d
|
Added selection of lines in network plot
|
2007-02-27 21:19:24 +00:00 |
|
Arnar Flatberg
|
78183df0e9
|
Alignment of function boxes
|
2007-02-27 18:14:58 +00:00 |
|
Arnar Flatberg
|
b754a5df44
|
Update from change of plots/view
|
2007-02-27 16:31:18 +00:00 |
|
Arnar Flatberg
|
61cfd00558
|
Division of plots -> view/plots
|
2007-02-27 16:28:03 +00:00 |
|
Arnar Flatberg
|
059cddbc16
|
Division of plots -> view/plots
|
2007-02-27 16:27:39 +00:00 |
|
Einar Ryeng
|
bf1ad1be87
|
Removed old help function.
|
2007-02-27 16:25:48 +00:00 |
|
Einar Ryeng
|
1ba4bf5f82
|
Initial config parser support.
|
2007-02-27 16:08:22 +00:00 |