Einar Ryeng
251f9d6cf4
Added command line options to create a new project based on a given workflow.
2006-04-25 12:19:25 +00:00
Einar Ryeng
16820cf29e
The refresh button in the toolbar reloads the currently active workflow module.
2006-04-25 10:46:06 +00:00
Truls Alexander Tangstad
9d7a5ba769
Optimized plot selection.
2006-04-25 10:08:12 +00:00
Einar Ryeng
359903c5ab
Made system a package.
2006-04-25 09:53:35 +00:00
Einar Ryeng
32fdca837a
Moved the generation of workflow list from dialogs.py to workflow.py, as
...
a step in the process of making command line options to the program.
2006-04-24 21:52:18 +00:00
Einar Ryeng
ba2a769f01
Function names are now folders in the navigator.
2006-04-24 15:20:27 +00:00
Einar Ryeng
179a2f88a9
The navigator now displays the plots and data in a tree that shows the ancestry information.
2006-04-24 14:52:21 +00:00
Truls Alexander Tangstad
6c72dec7fa
Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it.
2006-04-24 14:42:45 +00:00
Truls Alexander Tangstad
b807f27874
Fixed deselection in scatterplot.
2006-04-24 14:28:30 +00:00
Truls Alexander Tangstad
3fb7d06f4e
Fixed problem with plots accumulating.
2006-04-24 14:25:24 +00:00
Truls Alexander Tangstad
97e09b39a1
Added matrix-getter to Dataset.
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Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
2006-04-24 14:07:34 +00:00
Truls Alexander Tangstad
2bddb22867
Fixed navigator after changes in Dataset.
2006-04-24 11:39:11 +00:00
Arnar Flatberg
6356e2ebd6
get_dim_names and get_identifiers added in dataset
2006-04-24 11:23:30 +00:00
Arnar Flatberg
a2e4392a72
Complete rewrite of dataset class, with (all) the necessary updates
2006-04-24 09:53:07 +00:00
Einar Ryeng
53d0228074
* Added the full text of the GNU GPL.
2006-04-22 22:46:10 +00:00
Einar Ryeng
e762aef882
* system/dialogs.py: Oooops. Forgot this file in the previous commits. Well,
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here it is, currently only with the New Project dialog.
2006-04-22 22:29:02 +00:00
Einar Ryeng
2da88a5128
* Fixed a couple of menu items.
2006-04-22 21:56:30 +00:00
Einar Ryeng
efcdafe843
* The New project toolbar button now works. A druid will display the
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available workflows and ask you to select one of them. There are still
a couple of unresolved issues, but it works, so i upload it to ease
the use of the program.
2006-04-22 21:46:44 +00:00
Truls Alexander Tangstad
d26dd54f5b
Label verifier bugged when having generated labels.
2006-04-22 17:30:10 +00:00
Truls Alexander Tangstad
e151e66898
Let log windows always follow changes/new entries.
2006-04-22 15:41:08 +00:00
Truls Alexander Tangstad
c601ad3966
Removed data information as function in workflow and added as default action on datasets double-clicked in navigator.
2006-04-21 15:02:13 +00:00
Truls Alexander Tangstad
0918f0019b
Adding plots to panes is now done in row_activated_handler again, which makes it respond to double-clicks instead of just being selected in navigator.
2006-04-21 14:59:25 +00:00
Truls Alexander Tangstad
832827bd5a
Removed unused code.
2006-04-21 14:45:01 +00:00
Truls Alexander Tangstad
95eb78bf0d
Use name of data in navigator.
2006-04-21 14:30:10 +00:00
Truls Alexander Tangstad
f3a65a3c4f
Can now select data in navigator by single-clicking or moving with keyboard, no need to activate (double-click etc.).
2006-04-21 14:29:08 +00:00
Truls Alexander Tangstad
e4831ada13
Now can get and set name in Dataset. Also added getter for dim_names.
2006-04-21 12:28:29 +00:00
Truls Alexander Tangstad
33c9da117c
Typo.
2006-04-21 10:56:56 +00:00
Arnar Flatberg
fc4e62f799
current datset selection fix
2006-04-21 09:23:05 +00:00
Arnar Flatberg
7851048fb6
workflow update
2006-04-21 08:34:08 +00:00
Arnar Flatberg
2e53626393
s
2006-04-21 08:29:43 +00:00
Arnar Flatberg
800e7dc42e
New pca workflow and datset updates
2006-04-20 15:30:29 +00:00
Einar Ryeng
c09f2ceb92
* fluent, *.py: Data and plots returned from functions will now show up in
...
the navigator window.
2006-04-20 14:29:13 +00:00
Truls Alexander Tangstad
78ecadb3ab
Fixed label of menu item.
2006-04-20 14:11:52 +00:00
Einar Ryeng
f394610724
* fluent: removed old, non-working code.
2006-04-20 10:34:50 +00:00
Arnar Flatberg
6a4ae8ecf1
mainly overhaul of observers, and removal of project singleton
2006-04-20 10:27:58 +00:00
Einar Ryeng
f45c9c6bf7
* fluent: General cleanup.
2006-04-19 19:59:55 +00:00
Arnar Flatberg
4541716f90
small fix
2006-04-19 19:26:14 +00:00
Arnar Flatberg
0eebd9436c
object selection fix
2006-04-19 18:50:10 +00:00
Arnar Flatberg
56dac31529
Updated plots to demonstrate current selection update
2006-04-19 18:25:44 +00:00
Arnar Flatberg
1091bea0e9
category data and plot selection update|
2006-04-19 10:37:44 +00:00
Arnar Flatberg
a8937ededb
mainly play in plots
2006-04-18 14:25:46 +00:00
Arnar Flatberg
1d48bd85c5
added scatter
2006-04-18 09:19:59 +00:00
Einar Ryeng
a0d2c0d16d
* fluent, system/plots.py: Switching between four and one view now sort of
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works. Still a bit buggy, and with messy code.
2006-04-17 22:30:53 +00:00
Einar Ryeng
494aedc1b5
* system/plots.py, system/fluent.glade: There is now an active plot.
2006-04-17 20:27:39 +00:00
Einar Ryeng
3668481562
* system/workflow.py: Loads and returns gene to GO term mapping.
2006-04-17 12:35:31 +00:00
Arnar Flatberg
2f2d54e5c8
op
2006-04-17 09:08:40 +00:00
Einar Ryeng
adc3bf6bb1
* project.py: Added comments.
2006-04-17 00:29:00 +00:00
Einar Ryeng
4bdeef05f6
* annotations.py: The Annotations class now work. Querying along any
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axis is supported, but only two dimensional Annotations can be created.
2006-04-16 23:30:01 +00:00
Arnar Flatberg
23fb12f53a
First commit
2006-04-16 22:57:50 +00:00
Einar Ryeng
eb45c125aa
* annotations.py: Annotation class for two-way annotations. Does only support
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exactly two dimensions.
2006-04-16 22:06:29 +00:00
Einar Ryeng
5853216df4
Initial import.
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* fluent: The application program.
* system: The core system.
* workflows: Directory for workflow modules.
2006-04-16 18:25:54 +00:00
Einar Ryeng
Truls Alexander Tangstad
Arnar Flatberg