Truls Alexander Tangstad
5b1af849dc
Implemented Limma function for Affy workflow.
...
Extended ScatterPlot to take two datasets and updated code using it.
2006-05-09 13:17:17 +00:00
Reidar Strand Hagen
033d4d5333
removed reorderability
2006-05-09 13:00:16 +00:00
Reidar Strand Hagen
184a49ef9a
fixed ordering of multiple selected datasets
2006-05-09 12:22:50 +00:00
Truls Alexander Tangstad
0db25f1dd7
Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it.
2006-05-05 14:43:53 +00:00
Truls Alexander Tangstad
97f56f66ac
Added text-input for contrast-matrix creator for affymetrics workflow.
2006-05-05 14:30:23 +00:00
Truls Alexander Tangstad
98445498b5
If argument 'selection' exists in function.run, pass current selection to it.
2006-05-05 13:10:54 +00:00
Truls Alexander Tangstad
aa3a9ab619
Added automagic argument checking when running functions.
2006-05-05 10:10:03 +00:00
Truls Alexander Tangstad
9f7ee74189
Replaced function as button-attribute with lambda as button click handler.
2006-05-04 15:32:59 +00:00
Truls Alexander Tangstad
fafa373e67
Added categorygetter for PhenotypeDataset.
2006-05-04 13:30:04 +00:00
Reidar Strand Hagen
338778d7b1
Functions which doesn't require inputs will now run with data selected
2006-05-03 14:47:55 +00:00
Truls Alexander Tangstad
fb7128138e
Fixed floats in phenotype importer.
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Added PrintFunction for debug-printing.
Added PhenotypeImportFunction to AffyWorkflow.
2006-05-03 14:27:38 +00:00
Truls Alexander Tangstad
b757da5929
Implemented PhenotypeDataset with tests.
2006-05-03 14:04:28 +00:00
Reidar Strand Hagen
56a6028547
Validation on number of inputs added
2006-05-03 11:52:54 +00:00
Truls Alexander Tangstad
a613f0a3fa
Made scatter use the new methods for index/identifier-conversion.
2006-05-03 11:40:12 +00:00
Reidar Strand Hagen
5b2223afcd
Multiselection included. (Without input validation).
2006-05-03 11:11:45 +00:00
Truls Alexander Tangstad
91c1d8ea8b
Fixed getting empty selections.
2006-05-02 15:40:54 +00:00
Truls Alexander Tangstad
56c07c6392
Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof.
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Also added tests.
2006-05-02 14:06:48 +00:00
Truls Alexander Tangstad
bda48169fe
Fixed imports to make test run.
2006-05-02 13:21:24 +00:00
Truls Alexander Tangstad
2db1fc774e
Removed whitespace.
2006-05-02 13:14:07 +00:00
Reidar Strand Hagen
e363f1cd7d
Signals for drag'n'drop added to new plots
2006-05-02 12:38:00 +00:00
Reidar Strand Hagen
4e4150236f
Drag'n'drop for plots
2006-05-02 11:09:55 +00:00
Truls Alexander Tangstad
a2d3a9d5cc
Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input.
2006-04-28 11:44:55 +00:00
Reidar Strand Hagen
fa3b1182bc
Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py)
2006-04-27 15:51:25 +00:00
Truls Alexander Tangstad
8fd1f4ba83
Renamed module for affy workflow.
2006-04-27 15:06:01 +00:00
Truls Alexander Tangstad
5bb93af6f0
Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model.
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The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
2006-04-27 14:38:48 +00:00
Reidar Strand Hagen
c6ef6cdb07
Added auto-expand and auto-commit
2006-04-27 14:15:13 +00:00
Einar Ryeng
0df56248ee
Removed obsolete module annotations.
2006-04-27 12:41:51 +00:00
Truls Alexander Tangstad
fe0cf736f5
Created affy workflow.
2006-04-27 12:15:30 +00:00
Truls Alexander Tangstad
06805aa5e4
Changed colormap for LinePlot.
2006-04-27 12:05:20 +00:00
Truls Alexander Tangstad
3683f6c2e9
Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot.
2006-04-27 11:38:40 +00:00
Einar Ryeng
60c1d19a74
Get correct path for glade file based on the path of the system package.
2006-04-27 11:20:12 +00:00
Truls Alexander Tangstad
969006015a
Added LinePlot used by Affy importer.
2006-04-27 11:03:11 +00:00
Einar Ryeng
c95c18eb14
fluents.glade is now read from '/system/' under the directory of argv[0].
2006-04-27 10:54:18 +00:00
Einar Ryeng
959d114774
Changed from using default python version to python2.4 to make the
...
program work on debian systems. The program does not currently support
python 2.3, and probably never will because of the set class that is a built-in
only from python 2.4 and up.
2006-04-27 10:06:30 +00:00
Einar Ryeng
a92be02e80
Added help index and bug report menu options.
2006-04-27 09:55:19 +00:00
Einar Ryeng
2b0fdc186c
Fiexd the cancel button of the new project dialog. Closes #7
2006-04-26 14:01:46 +00:00
Einar Ryeng
a0ad4bdf54
Fixed logger bugs. Closes #6
2006-04-26 13:29:10 +00:00
Einar Ryeng
a9947daf14
Removed debug print statements.
2006-04-26 12:57:00 +00:00
Truls Alexander Tangstad
21edeecdc3
Add toolbar support to plots, with home made selection support <phew>.
2006-04-26 12:11:23 +00:00
Einar Ryeng
490038d9bf
Refreshing workflows now works.
2006-04-25 18:06:21 +00:00
Einar Ryeng
3e5be133ad
Fixed the fluents -l bug.
2006-04-25 12:36:38 +00:00
Einar Ryeng
251f9d6cf4
Added command line options to create a new project based on a given workflow.
2006-04-25 12:19:25 +00:00
Einar Ryeng
16820cf29e
The refresh button in the toolbar reloads the currently active workflow module.
2006-04-25 10:46:06 +00:00
Truls Alexander Tangstad
9d7a5ba769
Optimized plot selection.
2006-04-25 10:08:12 +00:00
Einar Ryeng
359903c5ab
Made system a package.
2006-04-25 09:53:35 +00:00
Einar Ryeng
32fdca837a
Moved the generation of workflow list from dialogs.py to workflow.py, as
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a step in the process of making command line options to the program.
2006-04-24 21:52:18 +00:00
Arnar Flatberg
cfbb76f25a
import * removed
2006-04-24 16:05:54 +00:00
Einar Ryeng
ba2a769f01
Function names are now folders in the navigator.
2006-04-24 15:20:27 +00:00
Einar Ryeng
179a2f88a9
The navigator now displays the plots and data in a tree that shows the ancestry information.
2006-04-24 14:52:21 +00:00
Truls Alexander Tangstad
6c72dec7fa
Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it.
2006-04-24 14:42:45 +00:00
Truls Alexander Tangstad
Reidar Strand Hagen
Einar Ryeng
Arnar Flatberg