Commit Graph

110 Commits

Author SHA1 Message Date
5b1af849dc Implemented Limma function for Affy workflow.
Extended ScatterPlot to take two datasets and updated code using it.
2006-05-09 13:17:17 +00:00
033d4d5333 removed reorderability 2006-05-09 13:00:16 +00:00
184a49ef9a fixed ordering of multiple selected datasets 2006-05-09 12:22:50 +00:00
0db25f1dd7 Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it. 2006-05-05 14:43:53 +00:00
97f56f66ac Added text-input for contrast-matrix creator for affymetrics workflow. 2006-05-05 14:30:23 +00:00
98445498b5 If argument 'selection' exists in function.run, pass current selection to it. 2006-05-05 13:10:54 +00:00
aa3a9ab619 Added automagic argument checking when running functions. 2006-05-05 10:10:03 +00:00
9f7ee74189 Replaced function as button-attribute with lambda as button click handler. 2006-05-04 15:32:59 +00:00
fafa373e67 Added categorygetter for PhenotypeDataset. 2006-05-04 13:30:04 +00:00
338778d7b1 Functions which doesn't require inputs will now run with data selected 2006-05-03 14:47:55 +00:00
fb7128138e Fixed floats in phenotype importer.
Added PrintFunction for debug-printing.
Added PhenotypeImportFunction to AffyWorkflow.
2006-05-03 14:27:38 +00:00
b757da5929 Implemented PhenotypeDataset with tests. 2006-05-03 14:04:28 +00:00
56a6028547 Validation on number of inputs added 2006-05-03 11:52:54 +00:00
a613f0a3fa Made scatter use the new methods for index/identifier-conversion. 2006-05-03 11:40:12 +00:00
5b2223afcd Multiselection included. (Without input validation). 2006-05-03 11:11:45 +00:00
91c1d8ea8b Fixed getting empty selections. 2006-05-02 15:40:54 +00:00
56c07c6392 Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof.
Also added tests.
2006-05-02 14:06:48 +00:00
bda48169fe Fixed imports to make test run. 2006-05-02 13:21:24 +00:00
2db1fc774e Removed whitespace. 2006-05-02 13:14:07 +00:00
e363f1cd7d Signals for drag'n'drop added to new plots 2006-05-02 12:38:00 +00:00
4e4150236f Drag'n'drop for plots 2006-05-02 11:09:55 +00:00
a2d3a9d5cc Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input. 2006-04-28 11:44:55 +00:00
fa3b1182bc Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py) 2006-04-27 15:51:25 +00:00
8fd1f4ba83 Renamed module for affy workflow. 2006-04-27 15:06:01 +00:00
5bb93af6f0 Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model.
The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
2006-04-27 14:38:48 +00:00
c6ef6cdb07 Added auto-expand and auto-commit 2006-04-27 14:15:13 +00:00
0df56248ee Removed obsolete module annotations. 2006-04-27 12:41:51 +00:00
fe0cf736f5 Created affy workflow. 2006-04-27 12:15:30 +00:00
06805aa5e4 Changed colormap for LinePlot. 2006-04-27 12:05:20 +00:00
3683f6c2e9 Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot. 2006-04-27 11:38:40 +00:00
60c1d19a74 Get correct path for glade file based on the path of the system package. 2006-04-27 11:20:12 +00:00
969006015a Added LinePlot used by Affy importer. 2006-04-27 11:03:11 +00:00
c95c18eb14 fluents.glade is now read from '/system/' under the directory of argv[0]. 2006-04-27 10:54:18 +00:00
959d114774 Changed from using default python version to python2.4 to make the
program work on debian systems. The program does not currently support
python 2.3, and probably never will because of the set class that is a built-in
only from python 2.4 and up.
2006-04-27 10:06:30 +00:00
a92be02e80 Added help index and bug report menu options. 2006-04-27 09:55:19 +00:00
2b0fdc186c Fiexd the cancel button of the new project dialog. Closes #7 2006-04-26 14:01:46 +00:00
a0ad4bdf54 Fixed logger bugs. Closes #6 2006-04-26 13:29:10 +00:00
a9947daf14 Removed debug print statements. 2006-04-26 12:57:00 +00:00
21edeecdc3 Add toolbar support to plots, with home made selection support <phew>. 2006-04-26 12:11:23 +00:00
490038d9bf Refreshing workflows now works. 2006-04-25 18:06:21 +00:00
3e5be133ad Fixed the fluents -l bug. 2006-04-25 12:36:38 +00:00
251f9d6cf4 Added command line options to create a new project based on a given workflow. 2006-04-25 12:19:25 +00:00
16820cf29e The refresh button in the toolbar reloads the currently active workflow module. 2006-04-25 10:46:06 +00:00
9d7a5ba769 Optimized plot selection. 2006-04-25 10:08:12 +00:00
359903c5ab Made system a package. 2006-04-25 09:53:35 +00:00
32fdca837a Moved the generation of workflow list from dialogs.py to workflow.py, as
a step in the process of making command line options to the program.
2006-04-24 21:52:18 +00:00
cfbb76f25a import * removed 2006-04-24 16:05:54 +00:00
ba2a769f01 Function names are now folders in the navigator. 2006-04-24 15:20:27 +00:00
179a2f88a9 The navigator now displays the plots and data in a tree that shows the ancestry information. 2006-04-24 14:52:21 +00:00
6c72dec7fa Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it. 2006-04-24 14:42:45 +00:00