Truls Alexander Tangstad
357cd1a1a6
Removed workflow being dependent on rpy by putting the import within the run function of affymatrix import.
2006-04-22 20:48:44 +00:00
Truls Alexander Tangstad
26f16acc9c
Made sure pickling use protocol 2 to make it faster and the files smaller (binary).
2006-04-22 18:11:31 +00:00
Truls Alexander Tangstad
553bfbe1ae
Big cleanup of affymatrix importer. Now use E@exprs to get matrix from loaded data.
...
Also made row and colname import better by ensuring vector-handling, ensuring that getting single column/row data works without being converted into a single string instead of string in a list.
Removed ;1-hack and use NO_CONVERSION to ensure no extra computation is done when calculating r stuff.
Now AffyMatrix data is named as such.
2006-04-22 17:59:15 +00:00
Truls Alexander Tangstad
5a2a1afe91
Added pickling as a quick and dirty way of loading and saving data in einars workflow.
2006-04-22 16:27:33 +00:00
Truls Alexander Tangstad
d123f0e1c1
Added doc-string for CelFileImportFunction.
2006-04-22 15:59:19 +00:00
Truls Alexander Tangstad
23914b2d1e
Added support for affy cel files.
2006-04-22 00:17:22 +00:00
Truls Alexander Tangstad
c601ad3966
Removed data information as function in workflow and added as default action on datasets double-clicked in navigator.
2006-04-21 15:02:13 +00:00
Truls Alexander Tangstad
efcd8c8587
Removed unused code.
2006-04-21 15:00:04 +00:00
Truls Alexander Tangstad
79481ed186
Added plot to output from test-function.
2006-04-21 14:58:42 +00:00
Truls Alexander Tangstad
07ac564668
Changed info function to show dialog instead of returning a view.
2006-04-21 14:12:18 +00:00
Truls Alexander Tangstad
c4f9f5c399
Created new workflow for showing information about a dataset as a view.
2006-04-21 13:04:31 +00:00
Arnar Flatberg
ccec17262b
Added random test data
2006-04-21 10:56:01 +00:00
Arnar Flatberg
fc4e62f799
current datset selection fix
2006-04-21 09:23:05 +00:00
Arnar Flatberg
7851048fb6
workflow update
2006-04-21 08:34:08 +00:00
Arnar Flatberg
aa6f598f87
workflow update
2006-04-21 08:30:37 +00:00
Arnar Flatberg
2e53626393
s
2006-04-21 08:29:43 +00:00
Arnar Flatberg
800e7dc42e
New pca workflow and datset updates
2006-04-20 15:30:29 +00:00
Einar Ryeng
c09f2ceb92
* fluent, *.py: Data and plots returned from functions will now show up in
...
the navigator window.
2006-04-20 14:29:13 +00:00
Arnar Flatberg
6a4ae8ecf1
mainly overhaul of observers, and removal of project singleton
2006-04-20 10:27:58 +00:00
Einar Ryeng
f45c9c6bf7
* fluent: General cleanup.
2006-04-19 19:59:55 +00:00
Einar Ryeng
c55a39f7f9
* workflows/go_workflow.py: A workflow that makes distance matrices based
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on gene ontology information. Currently only reads gene annotations.
2006-04-17 20:29:29 +00:00
Truls Alexander Tangstad
Arnar Flatberg
Einar Ryeng