150441ef0f
Forgot to check in selections.py in last commit.
2006-08-08 08:48:55 +00:00
bbd525bed0
Added reversedict and updated get_dentifiers and get_indices
2006-08-08 08:05:26 +00:00
677d368b60
Added category dataset
2006-08-08 07:54:00 +00:00
b769288b3b
Added a selection view tab, placed next to the "Log" tab. The tab currently
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only displays the current selection.
2006-08-07 14:14:42 +00:00
57cb203316
Closes #14
2006-08-04 09:32:11 +00:00
4c716e9428
NetworkPlot now works, but does not allow node colors or sizes to be passed as keyword arguments.
2006-08-03 14:30:06 +00:00
44b676f726
system/plots.py: Fixed a few bugs in NetworkPlot.
2006-08-01 14:26:33 +00:00
b3d681ef16
* system/plots.py: Added NetworkPlot, which may or may not work correctly.
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* system/dataset.py: Removed a few lines of obsolete code.
2006-08-01 13:22:39 +00:00
37b4d55a86
2006-08-01 11:01:52 +00:00
a55a872399
fix output for indices is empty array
2006-08-01 10:53:44 +00:00
27472defda
bugfix in get_identifiers
2006-08-01 10:33:45 +00:00
676ea4e0b9
removed shape in constructor, added all_dims to dataset base class, updated get_identifiers and get_indices
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Denne linjen og de som er under vil bli ignorert--
M dataset.py
2006-08-01 09:45:53 +00:00
61da4f562e
Added LICENCE (the pure GPL text copied verbatim from gnu.org) and README.
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Started to add a NetworkX plot in plots.py
2006-07-31 14:57:24 +00:00
87f87e36c8
* system/fluents.py: Fixed a bug where the the application tried to load
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a toolbar from None
* system/plots.py: Fixed MainView.insert_view that was a no-op when in large
view.
* system/dataset.py: Changed __str__ of dataset to also show names of dimensions.
2006-07-21 14:30:09 +00:00
aca9a47f56
Toolbars work again.
2006-06-01 13:51:16 +00:00
0670c42bd4
Drag and drop from the navigator to the viewframes now work.
2006-05-29 19:14:48 +00:00
581cef75ae
Fixed plot things. A plot can only be attached to one view now.
2006-05-29 11:24:33 +00:00
62c1d79dac
Fixed large/small plot bug by adding ViewFrames that contains plots.
2006-05-22 21:43:24 +00:00
9ab1ebe687
Small cleanup.
2006-05-09 14:16:22 +00:00
443b18cea6
Made sure ordering of matrices are ok.
2006-05-09 14:13:09 +00:00
86f89b6ffe
Typo.
2006-05-09 13:51:14 +00:00
5b1af849dc
Implemented Limma function for Affy workflow.
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Extended ScatterPlot to take two datasets and updated code using it.
2006-05-09 13:17:17 +00:00
033d4d5333
removed reorderability
2006-05-09 13:00:16 +00:00
184a49ef9a
fixed ordering of multiple selected datasets
2006-05-09 12:22:50 +00:00
0db25f1dd7
Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it.
2006-05-05 14:43:53 +00:00
97f56f66ac
Added text-input for contrast-matrix creator for affymetrics workflow.
2006-05-05 14:30:23 +00:00
98445498b5
If argument 'selection' exists in function.run, pass current selection to it.
2006-05-05 13:10:54 +00:00
aa3a9ab619
Added automagic argument checking when running functions.
2006-05-05 10:10:03 +00:00
9f7ee74189
Replaced function as button-attribute with lambda as button click handler.
2006-05-04 15:32:59 +00:00
fafa373e67
Added categorygetter for PhenotypeDataset.
2006-05-04 13:30:04 +00:00
338778d7b1
Functions which doesn't require inputs will now run with data selected
2006-05-03 14:47:55 +00:00
fb7128138e
Fixed floats in phenotype importer.
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Added PrintFunction for debug-printing.
Added PhenotypeImportFunction to AffyWorkflow.
2006-05-03 14:27:38 +00:00
b757da5929
Implemented PhenotypeDataset with tests.
2006-05-03 14:04:28 +00:00
56a6028547
Validation on number of inputs added
2006-05-03 11:52:54 +00:00
a613f0a3fa
Made scatter use the new methods for index/identifier-conversion.
2006-05-03 11:40:12 +00:00
5b2223afcd
Multiselection included. (Without input validation).
2006-05-03 11:11:45 +00:00
91c1d8ea8b
Fixed getting empty selections.
2006-05-02 15:40:54 +00:00
56c07c6392
Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof.
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Also added tests.
2006-05-02 14:06:48 +00:00
bda48169fe
Fixed imports to make test run.
2006-05-02 13:21:24 +00:00
2db1fc774e
Removed whitespace.
2006-05-02 13:14:07 +00:00
e363f1cd7d
Signals for drag'n'drop added to new plots
2006-05-02 12:38:00 +00:00
4e4150236f
Drag'n'drop for plots
2006-05-02 11:09:55 +00:00
a2d3a9d5cc
Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input.
2006-04-28 11:44:55 +00:00
fa3b1182bc
Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py)
2006-04-27 15:51:25 +00:00
8fd1f4ba83
Renamed module for affy workflow.
2006-04-27 15:06:01 +00:00
5bb93af6f0
Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model.
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The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
2006-04-27 14:38:48 +00:00
c6ef6cdb07
Added auto-expand and auto-commit
2006-04-27 14:15:13 +00:00
0df56248ee
Removed obsolete module annotations.
2006-04-27 12:41:51 +00:00
fe0cf736f5
Created affy workflow.
2006-04-27 12:15:30 +00:00
06805aa5e4
Changed colormap for LinePlot.
2006-04-27 12:05:20 +00:00
