130 lines
3.7 KiB
Python
Executable File
130 lines
3.7 KiB
Python
Executable File
#!/usr/bin/python
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import sys
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sys.path.append('system')
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sys.path.append('workflows')
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import pygtk
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pygtk.require('2.0')
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import gtk
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import gtk.gdk
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import gtk.glade
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import gnome
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import gnome.ui
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import pango
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import project
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import workflow
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import dataset
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import logger
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import plots
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import navigator
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import go_workflow
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import pca_workflow
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import scipy
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PROGRAM_NAME = 'fluent'
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VERSION = '0.1.0'
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GLADEFILENAME = 'system/fluent.glade'
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class FluentApp:
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def __init__(self):
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# Application variables
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self.project = project.Project()
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# add test data ##################
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x = scipy.rand(200,3)
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def_list = [ ['samples',[]], ['genes',['a','b','c']] ]
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test_data1 = dataset.Dataset(x,def_list)
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self.project.add_dataset(test_data1)
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#y = scipy.rand(200,2)
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#def_list = [ ['samples',[]], ['yclasses',['C','N']] ]
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#test_data2 = dataset.Dataset(y,def_list)
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####################
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self.current_data = None
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gtk.glade.set_custom_handler(self.custom_object_factory)
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self.widget_tree = gtk.glade.XML(GLADEFILENAME, 'appwindow')
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self.workflow = pca_workflow.PCAWorkflow(self)
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self.workflow.add_project(self.project)
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def custom_object_factory(self, glade, function_name, widget_name,\
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str1, str2, int1, int2):
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handler = getattr(self, function_name)
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return handler(str1, str2, int1, int2)
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def create_logview(self, str1, str2, int1, int2):
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# Set up log view
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self.log_view = logger.LogView(logger.logger)
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self.log_view.show()
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return self.log_view
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def create_main_view(self, str1, str2, int1, int2):
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self.main_view = plots.MainView()
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self.main_view.show()
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return self.main_view
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def create_small_view(self, str1, str2, int1, int2):
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self.small_view = plots.SmallView()
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self.small_view.show()
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return self.small_view
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def create_large_view(self, str1, str2, int1, int2,project):
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self.large_view = plots.LargeView()
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self.large_view.show()
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return self.large_view
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def create_navigator_view(self, str1, str2, int1, int2):
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tree = self.project.data_tree
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self.navigator_view = navigator.NavigatorView(tree, self)
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self.navigator_view.show()
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return self.navigator_view
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def show(self):
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self.init_gui()
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def init_gui(self):
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self['appwindow'].set_size_request(800, 600)
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# Set up workflow
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wf_menu = workflow.WorkflowView(self.workflow)
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wf_menu.show()
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self['workflow_vbox'].pack_end(wf_menu)
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# Set up plot toolbar
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# self['plot_toolbar_dock'].add(plot.get_toolbar(self.app))
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# Connect signals
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signals = {'on_quit1_activate' : (gtk.main_quit),
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'on_appwindow_delete_event' : (gtk.main_quit),
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'on_zoom_in_button_clicked' : (self.on_single_view),
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'on_zoom_out_button_clicked' : (self.on_multiple_view)}
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self.widget_tree.signal_autoconnect(signals)
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# Log that we've set up the app now
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logger.log('debug', 'Program started')
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def change_plot(self, plot):
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pt = self.widget_tree.get_widget('main_view')
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pt.insert_view(plot)
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def on_single_view(self, button):
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nb = self.widget_tree.get_widget('main_view')
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nb.goto_large()
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def on_multiple_view(self, button):
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nb = self.widget_tree.get_widget('main_view')
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nb.goto_small()
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def __getitem__(self, key):
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return self.widget_tree.get_widget(key)
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if __name__ == '__main__':
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gnome.program_init(PROGRAM_NAME, VERSION)
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app = FluentApp()
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app.show()
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gtk.main()
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