Projects/laydi
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  • eb203ea8ad Bugfix; keeping view if table size increases. einarr 2006-10-17 10:06:27 +00:00
  • 9162deabac Updated icon. einarr 2006-10-16 20:16:50 +00:00
  • d9ec8f1611 Small code cleanup. Removed some lines of code that were commented out. einarr 2006-10-16 20:01:08 +00:00
  • eefbc438bc The application is now a singleton. Added button to choose numer of plots. einarr 2006-10-16 19:57:40 +00:00
  • ebdf6d4aba Updated icons flatberg 2006-10-14 17:17:23 +00:00
  • 16036e5b52 Removed text labels from toolbar. einarr 2006-10-14 15:31:38 +00:00
  • e09b3e3c3e Changing active plot when plot title is clicked. einarr 2006-10-14 14:50:27 +00:00
  • e08cc8b816 The active plot is now more visible. einarr 2006-10-13 22:25:18 +00:00
  • f826931105 Toolbars now get automatically updated from the global mode setting when the mouse enters a plot. einarr 2006-10-12 18:33:38 +00:00
  • b1bfe1fe3e Fixed selection issues that were probably introduced by the merge from the toolbar branch. einarr 2006-10-12 17:38:41 +00:00
  • d9fd4fc127 Merged in the toolbar branch. The toolbar branch is now obsolte. einarr 2006-10-12 14:58:36 +00:00
  • ded2faaf2c Removed the title of the plot from the canvas, as it is now shown above the canvas as well. Updated the matplotlib axis limits to reflect this and allow more space for the plot. toolbar einarr 2006-10-12 14:56:53 +00:00
  • 92a8a819e8 Plots restore current selection on set_frozen(False) einarr 2006-10-12 12:58:48 +00:00
  • 3a62580125 Plots now show names outside the canvas. einarr 2006-10-12 12:46:34 +00:00
  • 31527e51fd Added freeze icon. einarr 2006-10-12 12:20:19 +00:00
  • 28cab35cd5 The toolbar functionality is almost back to normal. einarr 2006-10-12 11:44:49 +00:00
  • f435b37046 Rectangle modes work, pan does not. einarr 2006-10-11 12:05:13 +00:00
  • a6571d8c6b Cleaned up toolbar code, lots of work still to be done. Does not work. einarr 2006-10-10 21:15:13 +00:00
  • 0ed180d6ab move icon flatberg 2006-10-10 21:09:12 +00:00
  • 5e2d1a4ae6 toolbar icons flatberg 2006-10-10 15:36:19 +00:00
  • 502cd22dc8 flatberg 2006-10-10 15:23:35 +00:00
  • 958c6dbfdf testing new toolbar flatberg 2006-10-10 15:19:12 +00:00
  • 026d68cc5a only update novel current selection flatberg 2006-10-09 18:31:09 +00:00
  • 38b77a8f25 update flatberg 2006-10-09 18:09:08 +00:00
  • e6bf49c34b Toolbar update flatberg 2006-10-09 18:04:39 +00:00
  • 9bfe4a30df toolbar mode get and set flatberg 2006-10-09 18:03:37 +00:00
  • ba91663075 svg-format icons flatberg 2006-10-06 10:29:00 +00:00
  • 818cb9f0b7 added blitting flatberg 2006-10-06 10:20:53 +00:00
  • 7940e51867 added copy flatberg 2006-10-06 10:19:19 +00:00
  • 7959a167fb Changed layout from pydot til pygraphviz. Pydot will not be used in Fluents anymore. einarr 2006-10-03 21:06:19 +00:00
  • fb1ab3e4e9 Fixed a bug in NetworkDataset. einarr 2006-10-03 21:05:41 +00:00
  • b49f25cb32 Added matplotlib specific options, matplotlibrc flatberg 2006-09-18 17:24:52 +00:00
  • c90f7aabfc Some adjustements for lineplot flatberg 2006-09-18 17:23:34 +00:00
  • c370d9d250 copy() added to dataset. Does deepcopy. deepcopy issue fixed in ReverseDict flatberg 2006-09-16 10:36:57 +00:00
  • c7f74f67ca Fixed selection bug in NetworkPlot. The bug was introduced by the switch to numpy. einarr 2006-09-15 19:03:31 +00:00
  • b8d503a91f Typofix. einarr 2006-09-15 14:17:17 +00:00
  • ced0e9aa5d Various bugfixes to the new way of handling selections. einarr 2006-09-08 19:42:32 +00:00
  • e0ca48d4b3 Changed how the selection list works. CategoryDatasets can be dragged down to the selection list, and will then be converted to Selections. einarr 2006-09-08 18:25:03 +00:00
  • df7f98adec Turned off show-arrow on NetworkPlot einarr 2006-08-31 15:59:17 +00:00
  • 92fe9d8e75 Always show full toolbar on ScatterPlots. einarr 2006-08-31 15:45:33 +00:00
  • a374510cfc Fixed a bug when dragging a plot into the active ViewFrame. einarr 2006-08-31 15:35:55 +00:00
  • a6186d7cb6 Closes #15 einarr 2006-08-31 13:27:58 +00:00
  • f47a9066e3 Removed print statements. einarr 2006-08-31 12:24:06 +00:00
  • 5c45308279 Double clicking a function in the navigator causes the first four plots of that function to be displayed in the main view. If the function has returned less than four plots the remaining ViewFrames will be cleared. einarr 2006-08-31 10:57:44 +00:00
  • 0b58c5ea28 Switch to numpy (scipy_version>1.0) changes flatberg 2006-08-31 10:04:19 +00:00
  • a0786d521a Removed SinePlot from the test workflow. einarr 2006-08-30 14:38:33 +00:00
  • 0d8edc91ca Identifier lists are now sorted, and there is no active list when a row is selected. einarr 2006-08-30 13:56:54 +00:00
  • a670fc6b61 cleaning up flatberg 2006-08-30 13:39:32 +00:00
  • fc2891bad8 removed SinePlot and and added general selection sensitive function thingy flatberg 2006-08-30 13:21:08 +00:00
  • b000792faa Added method: as_selections() to CategoryDataset flatberg 2006-08-30 12:37:08 +00:00
  • 026dc639e3 Selections are selected when a row is activated. Identifiers are updated when cursor-changed is called. einarr 2006-08-30 11:36:30 +00:00
  • fc21c58ab3 Added icons to navigator flatberg 2006-08-30 10:27:45 +00:00
  • 1b9aff1c5a The selection view now works. Functions can return a dataset.Selection object which will be stored in the selection list. einarr 2006-08-29 23:57:21 +00:00
  • ae7a6a5a0e Added extended toolbar with selection freeze flatberg 2006-08-29 09:03:28 +00:00
  • 97e652edce fixes flatberg 2006-08-28 12:06:05 +00:00
  • 7eb3fa8b46 Fixed dataset placement in navigator flatberg 2006-08-27 14:12:37 +00:00
  • edd7d47cf1 Added regular scatterplot with size and color options flatberg 2006-08-14 16:19:51 +00:00
  • a5c5987fc3 updated Lineview and Plot flatberg 2006-08-14 15:01:34 +00:00
  • fc8b2e601f update flatberg 2006-08-14 11:52:26 +00:00
  • 8016d732d2 Added LineViewPLot and renamed ScatterPlot to ScatterMarkerPlot flatberg 2006-08-14 09:26:54 +00:00
  • b14dc3c9c2 Added from_file and to_file flatberg 2006-08-13 11:35:12 +00:00
  • 06905934db Fixed update bug. The list of currently selected elements is now automatically updated from selection_changed(). einarr 2006-08-09 14:35:42 +00:00
  • 2e2fa85727 removed message, removed draw from release_select, added view limits update in scatterplot flatberg 2006-08-09 08:02:38 +00:00
  • e846a83cb8 removed toolbar message on select flatberg 2006-08-08 14:37:31 +00:00
  • 25f102bafd removed ac.xlear() flatberg 2006-08-08 11:09:59 +00:00
  • 9d0e088ced get_dim_names -> get_dim_name flatberg 2006-08-08 10:34:15 +00:00
  • 150441ef0f Forgot to check in selections.py in last commit. einarr 2006-08-08 08:48:55 +00:00
  • bbd525bed0 Added reversedict and updated get_dentifiers and get_indices flatberg 2006-08-08 08:05:26 +00:00
  • 677d368b60 Added category dataset flatberg 2006-08-08 07:54:00 +00:00
  • b769288b3b Added a selection view tab, placed next to the "Log" tab. The tab currently only displays the current selection. einarr 2006-08-07 14:14:42 +00:00
  • 57cb203316 Closes #14 einarr 2006-08-04 09:32:11 +00:00
  • 4c716e9428 NetworkPlot now works, but does not allow node colors or sizes to be passed as keyword arguments. einarr 2006-08-03 14:30:06 +00:00
  • 44b676f726 system/plots.py: Fixed a few bugs in NetworkPlot. einarr 2006-08-01 14:26:33 +00:00
  • b3d681ef16 * system/plots.py: Added NetworkPlot, which may or may not work correctly. * system/dataset.py: Removed a few lines of obsolete code. einarr 2006-08-01 13:22:39 +00:00
  • 37b4d55a86 flatberg 2006-08-01 11:01:52 +00:00
  • a55a872399 fix output for indices is empty array flatberg 2006-08-01 10:53:44 +00:00
  • 27472defda bugfix in get_identifiers flatberg 2006-08-01 10:33:45 +00:00
  • 676ea4e0b9 removed shape in constructor, added all_dims to dataset base class, updated get_identifiers and get_indices Denne linjen og de som er under vil bli ignorert-- flatberg 2006-08-01 09:45:53 +00:00
  • 61da4f562e Added LICENCE (the pure GPL text copied verbatim from gnu.org) and README. Started to add a NetworkX plot in plots.py einarr 2006-07-31 14:57:24 +00:00
  • 87f87e36c8 * system/fluents.py: Fixed a bug where the the application tried to load a toolbar from None einarr 2006-07-21 14:30:09 +00:00
  • aca9a47f56 Toolbars work again. einarr 2006-06-01 13:51:16 +00:00
  • 0670c42bd4 Drag and drop from the navigator to the viewframes now work. einarr 2006-05-29 19:14:48 +00:00
  • 581cef75ae Fixed plot things. A plot can only be attached to one view now. einarr 2006-05-29 11:24:33 +00:00
  • 62c1d79dac Fixed large/small plot bug by adding ViewFrames that contains plots. einarr 2006-05-22 21:43:24 +00:00
  • 9ab1ebe687 Small cleanup. tangstad 2006-05-09 14:16:22 +00:00
  • 443b18cea6 Made sure ordering of matrices are ok. tangstad 2006-05-09 14:13:09 +00:00
  • 86f89b6ffe Typo. tangstad 2006-05-09 13:51:14 +00:00
  • 5b1af849dc Implemented Limma function for Affy workflow. Extended ScatterPlot to take two datasets and updated code using it. tangstad 2006-05-09 13:17:17 +00:00
  • 033d4d5333 removed reorderability reidarst 2006-05-09 13:00:16 +00:00
  • 184a49ef9a fixed ordering of multiple selected datasets reidarst 2006-05-09 12:22:50 +00:00
  • 0db25f1dd7 Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it. tangstad 2006-05-05 14:43:53 +00:00
  • 97f56f66ac Added text-input for contrast-matrix creator for affymetrics workflow. tangstad 2006-05-05 14:30:23 +00:00
  • 98445498b5 If argument 'selection' exists in function.run, pass current selection to it. tangstad 2006-05-05 13:10:54 +00:00
  • aa3a9ab619 Added automagic argument checking when running functions. tangstad 2006-05-05 10:10:03 +00:00
  • 9f7ee74189 Replaced function as button-attribute with lambda as button click handler. tangstad 2006-05-04 15:32:59 +00:00
  • fafa373e67 Added categorygetter for PhenotypeDataset. tangstad 2006-05-04 13:30:04 +00:00
  • 338778d7b1 Functions which doesn't require inputs will now run with data selected reidarst 2006-05-03 14:47:55 +00:00
  • fb7128138e Fixed floats in phenotype importer. Added PrintFunction for debug-printing. Added PhenotypeImportFunction to AffyWorkflow. tangstad 2006-05-03 14:27:38 +00:00
  • b757da5929 Implemented PhenotypeDataset with tests. tangstad 2006-05-03 14:04:28 +00:00
  • 56a6028547 Validation on number of inputs added reidarst 2006-05-03 11:52:54 +00:00