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16 Commits

Author SHA1 Message Date
Truls Alexander Tangstad 357cd1a1a6 Removed workflow being dependent on rpy by putting the import within the run function of affymatrix import. 2006-04-22 20:48:44 +00:00
Truls Alexander Tangstad 26f16acc9c Made sure pickling use protocol 2 to make it faster and the files smaller (binary). 2006-04-22 18:11:31 +00:00
Truls Alexander Tangstad 553bfbe1ae Big cleanup of affymatrix importer. Now use E@exprs to get matrix from loaded data.
Also made row and colname import better by ensuring vector-handling, ensuring that getting single column/row data works without being converted into a single string instead of string in a list.
Removed ;1-hack and use NO_CONVERSION to ensure no extra computation is done when calculating r stuff.
Now AffyMatrix data is named as such.
2006-04-22 17:59:15 +00:00
Truls Alexander Tangstad 5a2a1afe91 Added pickling as a quick and dirty way of loading and saving data in einars workflow. 2006-04-22 16:27:33 +00:00
Truls Alexander Tangstad d123f0e1c1 Added doc-string for CelFileImportFunction. 2006-04-22 15:59:19 +00:00
Truls Alexander Tangstad 23914b2d1e Added support for affy cel files. 2006-04-22 00:17:22 +00:00
Truls Alexander Tangstad c601ad3966 Removed data information as function in workflow and added as default action on datasets double-clicked in navigator. 2006-04-21 15:02:13 +00:00
Truls Alexander Tangstad efcd8c8587 Removed unused code. 2006-04-21 15:00:04 +00:00
Truls Alexander Tangstad 79481ed186 Added plot to output from test-function. 2006-04-21 14:58:42 +00:00
Truls Alexander Tangstad 07ac564668 Changed info function to show dialog instead of returning a view. 2006-04-21 14:12:18 +00:00
Truls Alexander Tangstad c4f9f5c399 Created new workflow for showing information about a dataset as a view. 2006-04-21 13:04:31 +00:00
Arnar Flatberg ccec17262b Added random test data 2006-04-21 10:56:01 +00:00
Einar Ryeng c09f2ceb92 * fluent, *.py: Data and plots returned from functions will now show up in
the navigator window.
2006-04-20 14:29:13 +00:00
Arnar Flatberg 6a4ae8ecf1 mainly overhaul of observers, and removal of project singleton 2006-04-20 10:27:58 +00:00
Einar Ryeng f45c9c6bf7 * fluent: General cleanup. 2006-04-19 19:59:55 +00:00
Einar Ryeng c55a39f7f9 * workflows/go_workflow.py: A workflow that makes distance matrices based
on gene ontology information. Currently only reads gene annotations.
2006-04-17 20:29:29 +00:00