Einar Ryeng
e0ca48d4b3
Changed how the selection list works. CategoryDatasets can be dragged down to
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the selection list, and will then be converted to Selections.
2006-09-08 18:25:03 +00:00
Arnar Flatberg
0b58c5ea28
Switch to numpy (scipy_version>1.0) changes
2006-08-31 10:04:19 +00:00
Arnar Flatberg
b000792faa
Added method: as_selections() to CategoryDataset
2006-08-30 12:37:08 +00:00
Einar Ryeng
1b9aff1c5a
The selection view now works. Functions can return a dataset.Selection object which will be stored in the selection list.
2006-08-29 23:57:21 +00:00
Arnar Flatberg
97e652edce
fixes
2006-08-28 12:06:05 +00:00
Arnar Flatberg
b14dc3c9c2
Added from_file and to_file
2006-08-13 11:35:12 +00:00
Arnar Flatberg
bbd525bed0
Added reversedict and updated get_dentifiers and get_indices
2006-08-08 08:05:26 +00:00
Arnar Flatberg
677d368b60
Added category dataset
2006-08-08 07:54:00 +00:00
Einar Ryeng
b769288b3b
Added a selection view tab, placed next to the "Log" tab. The tab currently
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only displays the current selection.
2006-08-07 14:14:42 +00:00
Einar Ryeng
b3d681ef16
* system/plots.py: Added NetworkPlot, which may or may not work correctly.
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* system/dataset.py: Removed a few lines of obsolete code.
2006-08-01 13:22:39 +00:00
Arnar Flatberg
37b4d55a86
2006-08-01 11:01:52 +00:00
Arnar Flatberg
a55a872399
fix output for indices is empty array
2006-08-01 10:53:44 +00:00
Arnar Flatberg
27472defda
bugfix in get_identifiers
2006-08-01 10:33:45 +00:00
Arnar Flatberg
676ea4e0b9
removed shape in constructor, added all_dims to dataset base class, updated get_identifiers and get_indices
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Denne linjen og de som er under vil bli ignorert--
M dataset.py
2006-08-01 09:45:53 +00:00
Einar Ryeng
87f87e36c8
* system/fluents.py: Fixed a bug where the the application tried to load
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a toolbar from None
* system/plots.py: Fixed MainView.insert_view that was a no-op when in large
view.
* system/dataset.py: Changed __str__ of dataset to also show names of dimensions.
2006-07-21 14:30:09 +00:00
Truls Alexander Tangstad
0db25f1dd7
Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it.
2006-05-05 14:43:53 +00:00
Truls Alexander Tangstad
b757da5929
Implemented PhenotypeDataset with tests.
2006-05-03 14:04:28 +00:00
Truls Alexander Tangstad
91c1d8ea8b
Fixed getting empty selections.
2006-05-02 15:40:54 +00:00
Truls Alexander Tangstad
56c07c6392
Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof.
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Also added tests.
2006-05-02 14:06:48 +00:00
Einar Ryeng
359903c5ab
Made system a package.
2006-04-25 09:53:35 +00:00
Truls Alexander Tangstad
97e09b39a1
Added matrix-getter to Dataset.
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Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
2006-04-24 14:07:34 +00:00
Arnar Flatberg
6356e2ebd6
get_dim_names and get_identifiers added in dataset
2006-04-24 11:23:30 +00:00
Arnar Flatberg
a2e4392a72
Complete rewrite of dataset class, with (all) the necessary updates
2006-04-24 09:53:07 +00:00
Truls Alexander Tangstad
d26dd54f5b
Label verifier bugged when having generated labels.
2006-04-22 17:30:10 +00:00
Truls Alexander Tangstad
e4831ada13
Now can get and set name in Dataset. Also added getter for dim_names.
2006-04-21 12:28:29 +00:00
Arnar Flatberg
7851048fb6
workflow update
2006-04-21 08:34:08 +00:00
Arnar Flatberg
2e53626393
s
2006-04-21 08:29:43 +00:00
Arnar Flatberg
800e7dc42e
New pca workflow and datset updates
2006-04-20 15:30:29 +00:00
Arnar Flatberg
6a4ae8ecf1
mainly overhaul of observers, and removal of project singleton
2006-04-20 10:27:58 +00:00
Arnar Flatberg
0eebd9436c
object selection fix
2006-04-19 18:50:10 +00:00
Arnar Flatberg
1091bea0e9
category data and plot selection update|
2006-04-19 10:37:44 +00:00
Arnar Flatberg
a8937ededb
mainly play in plots
2006-04-18 14:25:46 +00:00
Arnar Flatberg
2f2d54e5c8
op
2006-04-17 09:08:40 +00:00
Arnar Flatberg
23fb12f53a
First commit
2006-04-16 22:57:50 +00:00
Einar Ryeng
Arnar Flatberg
Truls Alexander Tangstad