einarr
44b676f726
system/plots.py: Fixed a few bugs in NetworkPlot.
2006-08-01 14:26:33 +00:00
einarr
b3d681ef16
* system/plots.py: Added NetworkPlot, which may or may not work correctly.
...
* system/dataset.py: Removed a few lines of obsolete code.
2006-08-01 13:22:39 +00:00
flatberg
37b4d55a86
2006-08-01 11:01:52 +00:00
flatberg
a55a872399
fix output for indices is empty array
2006-08-01 10:53:44 +00:00
flatberg
27472defda
bugfix in get_identifiers
2006-08-01 10:33:45 +00:00
flatberg
676ea4e0b9
removed shape in constructor, added all_dims to dataset base class, updated get_identifiers and get_indices
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Denne linjen og de som er under vil bli ignorert--
M dataset.py
2006-08-01 09:45:53 +00:00
einarr
61da4f562e
Added LICENCE (the pure GPL text copied verbatim from gnu.org) and README.
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Started to add a NetworkX plot in plots.py
2006-07-31 14:57:24 +00:00
einarr
87f87e36c8
* system/fluents.py: Fixed a bug where the the application tried to load
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a toolbar from None
* system/plots.py: Fixed MainView.insert_view that was a no-op when in large
view.
* system/dataset.py: Changed __str__ of dataset to also show names of dimensions.
2006-07-21 14:30:09 +00:00
einarr
aca9a47f56
Toolbars work again.
2006-06-01 13:51:16 +00:00
einarr
0670c42bd4
Drag and drop from the navigator to the viewframes now work.
2006-05-29 19:14:48 +00:00
einarr
581cef75ae
Fixed plot things. A plot can only be attached to one view now.
2006-05-29 11:24:33 +00:00
einarr
62c1d79dac
Fixed large/small plot bug by adding ViewFrames that contains plots.
2006-05-22 21:43:24 +00:00
tangstad
9ab1ebe687
Small cleanup.
2006-05-09 14:16:22 +00:00
tangstad
443b18cea6
Made sure ordering of matrices are ok.
2006-05-09 14:13:09 +00:00
tangstad
86f89b6ffe
Typo.
2006-05-09 13:51:14 +00:00
tangstad
5b1af849dc
Implemented Limma function for Affy workflow.
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Extended ScatterPlot to take two datasets and updated code using it.
2006-05-09 13:17:17 +00:00
reidarst
033d4d5333
removed reorderability
2006-05-09 13:00:16 +00:00
reidarst
184a49ef9a
fixed ordering of multiple selected datasets
2006-05-09 12:22:50 +00:00
tangstad
0db25f1dd7
Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it.
2006-05-05 14:43:53 +00:00
tangstad
97f56f66ac
Added text-input for contrast-matrix creator for affymetrics workflow.
2006-05-05 14:30:23 +00:00
tangstad
98445498b5
If argument 'selection' exists in function.run, pass current selection to it.
2006-05-05 13:10:54 +00:00
tangstad
aa3a9ab619
Added automagic argument checking when running functions.
2006-05-05 10:10:03 +00:00
tangstad
9f7ee74189
Replaced function as button-attribute with lambda as button click handler.
2006-05-04 15:32:59 +00:00
tangstad
fafa373e67
Added categorygetter for PhenotypeDataset.
2006-05-04 13:30:04 +00:00
reidarst
338778d7b1
Functions which doesn't require inputs will now run with data selected
2006-05-03 14:47:55 +00:00
tangstad
fb7128138e
Fixed floats in phenotype importer.
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Added PrintFunction for debug-printing.
Added PhenotypeImportFunction to AffyWorkflow.
2006-05-03 14:27:38 +00:00
tangstad
b757da5929
Implemented PhenotypeDataset with tests.
2006-05-03 14:04:28 +00:00
reidarst
56a6028547
Validation on number of inputs added
2006-05-03 11:52:54 +00:00
tangstad
a613f0a3fa
Made scatter use the new methods for index/identifier-conversion.
2006-05-03 11:40:12 +00:00
reidarst
5b2223afcd
Multiselection included. (Without input validation).
2006-05-03 11:11:45 +00:00
tangstad
91c1d8ea8b
Fixed getting empty selections.
2006-05-02 15:40:54 +00:00
tangstad
56c07c6392
Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof.
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Also added tests.
2006-05-02 14:06:48 +00:00
tangstad
bda48169fe
Fixed imports to make test run.
2006-05-02 13:21:24 +00:00
tangstad
2db1fc774e
Removed whitespace.
2006-05-02 13:14:07 +00:00
reidarst
e363f1cd7d
Signals for drag'n'drop added to new plots
2006-05-02 12:38:00 +00:00
reidarst
4e4150236f
Drag'n'drop for plots
2006-05-02 11:09:55 +00:00
tangstad
a2d3a9d5cc
Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input.
2006-04-28 11:44:55 +00:00
reidarst
fa3b1182bc
Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py)
2006-04-27 15:51:25 +00:00
tangstad
8fd1f4ba83
Renamed module for affy workflow.
2006-04-27 15:06:01 +00:00
tangstad
5bb93af6f0
Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model.
...
The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
2006-04-27 14:38:48 +00:00
reidarst
c6ef6cdb07
Added auto-expand and auto-commit
2006-04-27 14:15:13 +00:00
einarr
0df56248ee
Removed obsolete module annotations.
2006-04-27 12:41:51 +00:00
tangstad
fe0cf736f5
Created affy workflow.
2006-04-27 12:15:30 +00:00
tangstad
06805aa5e4
Changed colormap for LinePlot.
2006-04-27 12:05:20 +00:00
tangstad
3683f6c2e9
Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot.
2006-04-27 11:38:40 +00:00
einarr
60c1d19a74
Get correct path for glade file based on the path of the system package.
2006-04-27 11:20:12 +00:00
tangstad
969006015a
Added LinePlot used by Affy importer.
2006-04-27 11:03:11 +00:00
einarr
c95c18eb14
fluents.glade is now read from '/system/' under the directory of argv[0].
2006-04-27 10:54:18 +00:00
einarr
959d114774
Changed from using default python version to python2.4 to make the
...
program work on debian systems. The program does not currently support
python 2.3, and probably never will because of the set class that is a built-in
only from python 2.4 and up.
2006-04-27 10:06:30 +00:00
einarr
a92be02e80
Added help index and bug report menu options.
2006-04-27 09:55:19 +00:00
einarr
flatberg
tangstad
reidarst