Commit Graph

249 Commits

Author SHA1 Message Date
aeb37cf4cd Added supportp for tall X in PCA 2007-01-25 12:17:16 +00:00
fa3722600c pca options glade file 2007-01-25 12:15:30 +00:00
61bfc236e6 Changed location of PCA options glade file. 2007-01-25 12:15:19 +00:00
7a204a3426 Added option page to option dialog 2007-01-25 12:10:18 +00:00
1c2c2c8895 Multiple lib changes 2007-01-25 11:58:10 +00:00
a65d79697f Added Expand/Collapse menu choices to the GO browser context menu. This is
particularly useful when searching for GO terms, because the gtk TreeView
widget does not do interactive search in collapsed parts of the tree.
2007-01-21 16:16:37 +00:00
e03cc4ed4c Added a ScrolledWindow around the navigator. 2007-01-19 14:00:10 +00:00
7693f336ba Added a singleton project in the project module, so that the current project is
easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.

The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors. 

Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
f533344242 Added histogram in plot menu 2007-01-17 15:40:54 +00:00
7c20e6d780 Added simple histogram 2007-01-17 15:40:33 +00:00
1ffbf4f9e7 Added default implementation of set_current_selection in Plot, so that plots can safely
ignore selections without adding any code to the plot.

Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
06591e301e Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset. 2007-01-17 14:06:07 +00:00
c3c6e85044 Added ImagePlot, which displays a dataset as an image. 2007-01-17 13:20:04 +00:00
33c51505c4 Fixed the dataset loading so that it returns a correctly named Dataset. 2007-01-16 12:41:29 +00:00
f612dda72f Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
ea4c0af6de fixed shift/control on lasso 2007-01-15 15:46:24 +00:00
cacb0a27b7 Added "Save dataset" option to navigator context menu. 2007-01-15 13:58:56 +00:00
476c830a5e lasso 2007-01-15 13:47:47 +00:00
0a38cb7d4a added lasso 2007-01-15 13:47:18 +00:00
ee447b688c Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
58886726d8 Small updates. 2007-01-12 10:50:55 +00:00
ae3aa7e4aa Create Resnik distances and save them as ftsv. 2007-01-12 00:00:56 +00:00
08b7d8dd85 Added function to save fluents tab separated values (ftsv) files. 2007-01-11 23:24:05 +00:00
e4d7f8e5a2 Resnik distances between GO terms work now. 2007-01-11 22:01:31 +00:00
4b1d16ea78 Updated go-workflow. 2007-01-11 18:57:45 +00:00
3340b1b7ac Added support for union/intersection selections 2007-01-11 13:07:54 +00:00
d4f5a92010 Fixed typo. 2007-01-11 13:07:03 +00:00
9274b044b7 Added read_ftsv in dataset.py. This method reads fluents tab separated values
files and returns a dataset.
2007-01-10 17:35:58 +00:00
060732d980 More persumably non-working stuff. 2007-01-10 15:33:19 +00:00
1e0b99f283 small bugfix 2007-01-09 08:53:28 +00:00
fa047e0171 Committing non-working code that breaks go workflow. ;) 2007-01-08 21:13:22 +00:00
6f050d4f10 Fixed error in docstring. 2007-01-08 19:31:19 +00:00
1371bc1b1a Added function menu. Clicking the items still does not work, though. 2007-01-05 14:42:22 +00:00
f7fe171896 Added Optionsdialog for pca and pls 2007-01-04 13:53:47 +00:00
e08a8377ed Added Options and OptionsDialog 2007-01-04 13:53:03 +00:00
ebd4fdae7b Changed all places that load icons to do it through IconFactory. 2007-01-03 17:30:27 +00:00
57e58e3910 Renamed IconFactory.get_icon() -> IconFactory.get() 2007-01-03 13:46:39 +00:00
d45ae4f480 Added icon factory to ensure that all icons are loaded exactly once. This also
cleans up code and saves X pixmap memory.
2007-01-03 13:34:40 +00:00
75447d8840 Fixed function output bug. Datasets now appear as children of their first parent, also in gtk 2.10 2007-01-03 13:05:37 +00:00
c34f23190b init 2007-01-02 15:10:59 +00:00
3ef5522dd0 First import of chemometrics utils 2006-12-18 11:59:12 +00:00
fac9346aad Added very hackish annotation count reader. 2006-12-15 12:53:27 +00:00
6aa1a1a817 Code upgraded to adjust for new version of networkx 2006-11-24 13:29:09 +00:00
880509f8a9 Removed whitespace that broke plots. 2006-10-31 14:35:12 +00:00
fb77ddb549 Updated GO workflow. Options class test added. Reading the ontology takes too
long.
2006-10-26 16:51:42 +00:00
438dbd358b Dataset to colour of dragndrop in dataset + minor addjustments in networkplot 2006-10-25 12:56:21 +00:00
0b30aeac6f Updated GO workflow. 2006-10-22 23:19:54 +00:00
5491f5ce04 GO workflow. Does not work. 2006-10-22 15:31:36 +00:00
de4a65e7b3 Added the svg format icon for move 2006-10-18 12:47:01 +00:00
cdb8d1b026 Removed unit test for workflows. The only test file in the directory is
for a workflow that is not used.
2006-10-17 17:53:52 +00:00