Einar Ryeng
61da4f562e
Added LICENCE (the pure GPL text copied verbatim from gnu.org) and README.
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Started to add a NetworkX plot in plots.py
2006-07-31 14:57:24 +00:00
Einar Ryeng
87f87e36c8
* system/fluents.py: Fixed a bug where the the application tried to load
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a toolbar from None
* system/plots.py: Fixed MainView.insert_view that was a no-op when in large
view.
* system/dataset.py: Changed __str__ of dataset to also show names of dimensions.
2006-07-21 14:30:09 +00:00
Einar Ryeng
aca9a47f56
Toolbars work again.
2006-06-01 13:51:16 +00:00
Einar Ryeng
0670c42bd4
Drag and drop from the navigator to the viewframes now work.
2006-05-29 19:14:48 +00:00
Einar Ryeng
581cef75ae
Fixed plot things. A plot can only be attached to one view now.
2006-05-29 11:24:33 +00:00
Einar Ryeng
62c1d79dac
Fixed large/small plot bug by adding ViewFrames that contains plots.
2006-05-22 21:43:24 +00:00
Truls Alexander Tangstad
9ab1ebe687
Small cleanup.
2006-05-09 14:16:22 +00:00
Truls Alexander Tangstad
443b18cea6
Made sure ordering of matrices are ok.
2006-05-09 14:13:09 +00:00
Truls Alexander Tangstad
86f89b6ffe
Typo.
2006-05-09 13:51:14 +00:00
Truls Alexander Tangstad
5b1af849dc
Implemented Limma function for Affy workflow.
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Extended ScatterPlot to take two datasets and updated code using it.
2006-05-09 13:17:17 +00:00
Reidar Strand Hagen
033d4d5333
removed reorderability
2006-05-09 13:00:16 +00:00
Reidar Strand Hagen
184a49ef9a
fixed ordering of multiple selected datasets
2006-05-09 12:22:50 +00:00
Truls Alexander Tangstad
0db25f1dd7
Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it.
2006-05-05 14:43:53 +00:00
Truls Alexander Tangstad
97f56f66ac
Added text-input for contrast-matrix creator for affymetrics workflow.
2006-05-05 14:30:23 +00:00
Truls Alexander Tangstad
98445498b5
If argument 'selection' exists in function.run, pass current selection to it.
2006-05-05 13:10:54 +00:00
Truls Alexander Tangstad
aa3a9ab619
Added automagic argument checking when running functions.
2006-05-05 10:10:03 +00:00
Truls Alexander Tangstad
9f7ee74189
Replaced function as button-attribute with lambda as button click handler.
2006-05-04 15:32:59 +00:00
Truls Alexander Tangstad
fafa373e67
Added categorygetter for PhenotypeDataset.
2006-05-04 13:30:04 +00:00
Reidar Strand Hagen
338778d7b1
Functions which doesn't require inputs will now run with data selected
2006-05-03 14:47:55 +00:00
Truls Alexander Tangstad
fb7128138e
Fixed floats in phenotype importer.
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Added PrintFunction for debug-printing.
Added PhenotypeImportFunction to AffyWorkflow.
2006-05-03 14:27:38 +00:00
Truls Alexander Tangstad
b757da5929
Implemented PhenotypeDataset with tests.
2006-05-03 14:04:28 +00:00
Reidar Strand Hagen
56a6028547
Validation on number of inputs added
2006-05-03 11:52:54 +00:00
Truls Alexander Tangstad
a613f0a3fa
Made scatter use the new methods for index/identifier-conversion.
2006-05-03 11:40:12 +00:00
Reidar Strand Hagen
5b2223afcd
Multiselection included. (Without input validation).
2006-05-03 11:11:45 +00:00
Truls Alexander Tangstad
91c1d8ea8b
Fixed getting empty selections.
2006-05-02 15:40:54 +00:00
Truls Alexander Tangstad
56c07c6392
Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof.
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Also added tests.
2006-05-02 14:06:48 +00:00
Truls Alexander Tangstad
bda48169fe
Fixed imports to make test run.
2006-05-02 13:21:24 +00:00
Truls Alexander Tangstad
2db1fc774e
Removed whitespace.
2006-05-02 13:14:07 +00:00
Reidar Strand Hagen
e363f1cd7d
Signals for drag'n'drop added to new plots
2006-05-02 12:38:00 +00:00
Reidar Strand Hagen
4e4150236f
Drag'n'drop for plots
2006-05-02 11:09:55 +00:00
Truls Alexander Tangstad
a2d3a9d5cc
Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input.
2006-04-28 11:44:55 +00:00
Reidar Strand Hagen
fa3b1182bc
Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py)
2006-04-27 15:51:25 +00:00
Truls Alexander Tangstad
8fd1f4ba83
Renamed module for affy workflow.
2006-04-27 15:06:01 +00:00
Truls Alexander Tangstad
5bb93af6f0
Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model.
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The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
2006-04-27 14:38:48 +00:00
Reidar Strand Hagen
c6ef6cdb07
Added auto-expand and auto-commit
2006-04-27 14:15:13 +00:00
Einar Ryeng
0df56248ee
Removed obsolete module annotations.
2006-04-27 12:41:51 +00:00
Truls Alexander Tangstad
fe0cf736f5
Created affy workflow.
2006-04-27 12:15:30 +00:00
Truls Alexander Tangstad
06805aa5e4
Changed colormap for LinePlot.
2006-04-27 12:05:20 +00:00
Truls Alexander Tangstad
3683f6c2e9
Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot.
2006-04-27 11:38:40 +00:00
Einar Ryeng
60c1d19a74
Get correct path for glade file based on the path of the system package.
2006-04-27 11:20:12 +00:00
Truls Alexander Tangstad
969006015a
Added LinePlot used by Affy importer.
2006-04-27 11:03:11 +00:00
Einar Ryeng
c95c18eb14
fluents.glade is now read from '/system/' under the directory of argv[0].
2006-04-27 10:54:18 +00:00
Einar Ryeng
959d114774
Changed from using default python version to python2.4 to make the
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program work on debian systems. The program does not currently support
python 2.3, and probably never will because of the set class that is a built-in
only from python 2.4 and up.
2006-04-27 10:06:30 +00:00
Einar Ryeng
a92be02e80
Added help index and bug report menu options.
2006-04-27 09:55:19 +00:00
Einar Ryeng
2b0fdc186c
Fiexd the cancel button of the new project dialog. Closes #7
2006-04-26 14:01:46 +00:00
Einar Ryeng
a0ad4bdf54
Fixed logger bugs. Closes #6
2006-04-26 13:29:10 +00:00
Einar Ryeng
a9947daf14
Removed debug print statements.
2006-04-26 12:57:00 +00:00
Truls Alexander Tangstad
21edeecdc3
Add toolbar support to plots, with home made selection support <phew>.
2006-04-26 12:11:23 +00:00
Einar Ryeng
490038d9bf
Refreshing workflows now works.
2006-04-25 18:06:21 +00:00
Einar Ryeng
3e5be133ad
Fixed the fluents -l bug.
2006-04-25 12:36:38 +00:00
Einar Ryeng
Truls Alexander Tangstad
Reidar Strand Hagen