Projects/laydi
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65 Commits

Author SHA1 Message Date
Truls Alexander Tangstad 5bb93af6f0 Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model. 
The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
 2006-04-27 14:38:48 +00:00
Reidar Strand Hagen c6ef6cdb07 Added auto-expand and auto-commit 2006-04-27 14:15:13 +00:00
Einar Ryeng 0df56248ee Removed obsolete module annotations. 2006-04-27 12:41:51 +00:00
Truls Alexander Tangstad 06805aa5e4 Changed colormap for LinePlot. 2006-04-27 12:05:20 +00:00
Truls Alexander Tangstad 3683f6c2e9 Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot. 2006-04-27 11:38:40 +00:00
Einar Ryeng 60c1d19a74 Get correct path for glade file based on the path of the system package. 2006-04-27 11:20:12 +00:00
Truls Alexander Tangstad 969006015a Added LinePlot used by Affy importer. 2006-04-27 11:03:11 +00:00
Einar Ryeng c95c18eb14 fluents.glade is now read from '/system/' under the directory of argv[0]. 2006-04-27 10:54:18 +00:00
Einar Ryeng a92be02e80 Added help index and bug report menu options. 2006-04-27 09:55:19 +00:00
Einar Ryeng 2b0fdc186c Fiexd the cancel button of the new project dialog. Closes #7 2006-04-26 14:01:46 +00:00
Einar Ryeng a0ad4bdf54 Fixed logger bugs. Closes #6 2006-04-26 13:29:10 +00:00
Einar Ryeng a9947daf14 Removed debug print statements. 2006-04-26 12:57:00 +00:00
Truls Alexander Tangstad 21edeecdc3 Add toolbar support to plots, with home made selection support <phew>. 2006-04-26 12:11:23 +00:00
Einar Ryeng 490038d9bf Refreshing workflows now works. 2006-04-25 18:06:21 +00:00
Einar Ryeng 251f9d6cf4 Added command line options to create a new project based on a given workflow. 2006-04-25 12:19:25 +00:00
Einar Ryeng 16820cf29e The refresh button in the toolbar reloads the currently active workflow module. 2006-04-25 10:46:06 +00:00
Truls Alexander Tangstad 9d7a5ba769 Optimized plot selection. 2006-04-25 10:08:12 +00:00
Einar Ryeng 359903c5ab Made system a package. 2006-04-25 09:53:35 +00:00
Einar Ryeng 32fdca837a Moved the generation of workflow list from dialogs.py to workflow.py, as 
a step in the process of making command line options to the program.
 2006-04-24 21:52:18 +00:00
Einar Ryeng ba2a769f01 Function names are now folders in the navigator. 2006-04-24 15:20:27 +00:00
Einar Ryeng 179a2f88a9 The navigator now displays the plots and data in a tree that shows the ancestry information. 2006-04-24 14:52:21 +00:00
Truls Alexander Tangstad 6c72dec7fa Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it. 2006-04-24 14:42:45 +00:00
Truls Alexander Tangstad b807f27874 Fixed deselection in scatterplot. 2006-04-24 14:28:30 +00:00
Truls Alexander Tangstad 3fb7d06f4e Fixed problem with plots accumulating. 2006-04-24 14:25:24 +00:00
Truls Alexander Tangstad 97e09b39a1 Added matrix-getter to Dataset. 
Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
 2006-04-24 14:07:34 +00:00
Truls Alexander Tangstad 2bddb22867 Fixed navigator after changes in Dataset. 2006-04-24 11:39:11 +00:00
Arnar Flatberg 6356e2ebd6 get_dim_names and get_identifiers added in dataset 2006-04-24 11:23:30 +00:00
Arnar Flatberg a2e4392a72 Complete rewrite of dataset class, with (all) the necessary updates 2006-04-24 09:53:07 +00:00
Einar Ryeng 53d0228074 * Added the full text of the GNU GPL. 2006-04-22 22:46:10 +00:00
Einar Ryeng e762aef882 * system/dialogs.py: Oooops. Forgot this file in the previous commits. Well, 
here it is, currently only with the New Project dialog.
 2006-04-22 22:29:02 +00:00
Einar Ryeng 2da88a5128 * Fixed a couple of menu items. 2006-04-22 21:56:30 +00:00
Einar Ryeng efcdafe843 * The New project toolbar button now works. A druid will display the 
available workflows and ask you to select one of them. There are still
   a couple of unresolved issues, but it works, so i upload it to ease
   the use of the program.
 2006-04-22 21:46:44 +00:00
Truls Alexander Tangstad d26dd54f5b Label verifier bugged when having generated labels. 2006-04-22 17:30:10 +00:00
Truls Alexander Tangstad e151e66898 Let log windows always follow changes/new entries. 2006-04-22 15:41:08 +00:00
Truls Alexander Tangstad c601ad3966 Removed data information as function in workflow and added as default action on datasets double-clicked in navigator. 2006-04-21 15:02:13 +00:00
Truls Alexander Tangstad 0918f0019b Adding plots to panes is now done in row_activated_handler again, which makes it respond to double-clicks instead of just being selected in navigator. 2006-04-21 14:59:25 +00:00
Truls Alexander Tangstad 832827bd5a Removed unused code. 2006-04-21 14:45:01 +00:00
Truls Alexander Tangstad 95eb78bf0d Use name of data in navigator. 2006-04-21 14:30:10 +00:00
Truls Alexander Tangstad f3a65a3c4f Can now select data in navigator by single-clicking or moving with keyboard, no need to activate (double-click etc.). 2006-04-21 14:29:08 +00:00
Truls Alexander Tangstad e4831ada13 Now can get and set name in Dataset. Also added getter for dim_names. 2006-04-21 12:28:29 +00:00
Truls Alexander Tangstad 33c9da117c Typo. 2006-04-21 10:56:56 +00:00
Arnar Flatberg fc4e62f799 current datset selection fix 2006-04-21 09:23:05 +00:00
Arnar Flatberg 7851048fb6 workflow update 2006-04-21 08:34:08 +00:00
Arnar Flatberg 2e53626393 s 2006-04-21 08:29:43 +00:00
Arnar Flatberg 800e7dc42e New pca workflow and datset updates 2006-04-20 15:30:29 +00:00
Einar Ryeng c09f2ceb92 * fluent, *.py: Data and plots returned from functions will now show up in 
the navigator window.
 2006-04-20 14:29:13 +00:00
Truls Alexander Tangstad 78ecadb3ab Fixed label of menu item. 2006-04-20 14:11:52 +00:00
Einar Ryeng f394610724 * fluent: removed old, non-working code. 2006-04-20 10:34:50 +00:00
Arnar Flatberg 6a4ae8ecf1 mainly overhaul of observers, and removal of project singleton 2006-04-20 10:27:58 +00:00
Einar Ryeng f45c9c6bf7 * fluent: General cleanup. 2006-04-19 19:59:55 +00:00