7693f336ba
Added a singleton project in the project module, so that the current project is
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easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.
The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors.
Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
f533344242
Added histogram in plot menu
2007-01-17 15:40:54 +00:00
7c20e6d780
Added simple histogram
2007-01-17 15:40:33 +00:00
1ffbf4f9e7
Added default implementation of set_current_selection in Plot, so that plots can safely
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ignore selections without adding any code to the plot.
Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
06591e301e
Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset.
2007-01-17 14:06:07 +00:00
c3c6e85044
Added ImagePlot, which displays a dataset as an image.
2007-01-17 13:20:04 +00:00
33c51505c4
Fixed the dataset loading so that it returns a correctly named Dataset.
2007-01-16 12:41:29 +00:00
f612dda72f
Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
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Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
ea4c0af6de
fixed shift/control on lasso
2007-01-15 15:46:24 +00:00
cacb0a27b7
Added "Save dataset" option to navigator context menu.
2007-01-15 13:58:56 +00:00
476c830a5e
lasso
2007-01-15 13:47:47 +00:00
0a38cb7d4a
added lasso
2007-01-15 13:47:18 +00:00
ee447b688c
Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
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adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
58886726d8
Small updates.
2007-01-12 10:50:55 +00:00
ae3aa7e4aa
Create Resnik distances and save them as ftsv.
2007-01-12 00:00:56 +00:00
08b7d8dd85
Added function to save fluents tab separated values (ftsv) files.
2007-01-11 23:24:05 +00:00
e4d7f8e5a2
Resnik distances between GO terms work now.
2007-01-11 22:01:31 +00:00
4b1d16ea78
Updated go-workflow.
2007-01-11 18:57:45 +00:00
3340b1b7ac
Added support for union/intersection selections
2007-01-11 13:07:54 +00:00
d4f5a92010
Fixed typo.
2007-01-11 13:07:03 +00:00
9274b044b7
Added read_ftsv in dataset.py. This method reads fluents tab separated values
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files and returns a dataset.
2007-01-10 17:35:58 +00:00
060732d980
More persumably non-working stuff.
2007-01-10 15:33:19 +00:00
1e0b99f283
small bugfix
2007-01-09 08:53:28 +00:00
fa047e0171
Committing non-working code that breaks go workflow. ;)
2007-01-08 21:13:22 +00:00
6f050d4f10
Fixed error in docstring.
2007-01-08 19:31:19 +00:00
1371bc1b1a
Added function menu. Clicking the items still does not work, though.
2007-01-05 14:42:22 +00:00
f7fe171896
Added Optionsdialog for pca and pls
2007-01-04 13:53:47 +00:00
e08a8377ed
Added Options and OptionsDialog
2007-01-04 13:53:03 +00:00
ebd4fdae7b
Changed all places that load icons to do it through IconFactory.
2007-01-03 17:30:27 +00:00
57e58e3910
Renamed IconFactory.get_icon() -> IconFactory.get()
2007-01-03 13:46:39 +00:00
d45ae4f480
Added icon factory to ensure that all icons are loaded exactly once. This also
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cleans up code and saves X pixmap memory.
2007-01-03 13:34:40 +00:00
75447d8840
Fixed function output bug. Datasets now appear as children of their first parent, also in gtk 2.10
2007-01-03 13:05:37 +00:00
c34f23190b
init
2007-01-02 15:10:59 +00:00
3ef5522dd0
First import of chemometrics utils
2006-12-18 11:59:12 +00:00
fac9346aad
Added very hackish annotation count reader.
2006-12-15 12:53:27 +00:00
6aa1a1a817
Code upgraded to adjust for new version of networkx
2006-11-24 13:29:09 +00:00
880509f8a9
Removed whitespace that broke plots.
2006-10-31 14:35:12 +00:00
fb77ddb549
Updated GO workflow. Options class test added. Reading the ontology takes too
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long.
2006-10-26 16:51:42 +00:00
438dbd358b
Dataset to colour of dragndrop in dataset + minor addjustments in networkplot
2006-10-25 12:56:21 +00:00
0b30aeac6f
Updated GO workflow.
2006-10-22 23:19:54 +00:00
5491f5ce04
GO workflow. Does not work.
2006-10-22 15:31:36 +00:00
de4a65e7b3
Added the svg format icon for move
2006-10-18 12:47:01 +00:00
cdb8d1b026
Removed unit test for workflows. The only test file in the directory is
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for a workflow that is not used.
2006-10-17 17:53:52 +00:00
1f9a400057
Added docstrings.
2006-10-17 17:50:42 +00:00
f7ededa451
Removed executable bit.
2006-10-17 17:50:18 +00:00
fe96772319
Expanded some documentation.
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Added clean target to doc Makefile.
2006-10-17 17:18:46 +00:00
5d4700da20
Removed some example rubbish that was placed after the GPL and had gotten
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inside the file due to sloppy cut-n-paste.
2006-10-17 17:17:50 +00:00
fb3d9f2050
Added documentation directory with a Makefile to generate source code
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documentation. This adds python-epydoc as a build dependency.
2006-10-17 15:06:24 +00:00
4153f06c60
Added start-up script that sets PYTHONPATH and starts fluents.
2006-10-17 14:43:57 +00:00
375d45e0cc
Updated import statements, and removed the workflows pca_workflow and
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affy_workflow.
2006-10-17 14:42:27 +00:00
