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327 Commits

Author SHA1 Message Date
Einar Ryeng 57cb203316 Closes #14 2006-08-04 09:32:11 +00:00
Einar Ryeng 4c716e9428 NetworkPlot now works, but does not allow node colors or sizes to be passed as keyword arguments. 2006-08-03 14:30:06 +00:00
Einar Ryeng 44b676f726 system/plots.py: Fixed a few bugs in NetworkPlot. 2006-08-01 14:26:33 +00:00
Einar Ryeng b3d681ef16 * system/plots.py: Added NetworkPlot, which may or may not work correctly. 
* system/dataset.py: Removed a few lines of obsolete code.
 2006-08-01 13:22:39 +00:00
Arnar Flatberg 37b4d55a86 2006-08-01 11:01:52 +00:00
Arnar Flatberg a55a872399 fix output for indices is empty array 2006-08-01 10:53:44 +00:00
Arnar Flatberg 27472defda bugfix in get_identifiers 2006-08-01 10:33:45 +00:00
Arnar Flatberg 676ea4e0b9 removed shape in constructor, added all_dims to dataset base class, updated get_identifiers and get_indices 
Denne linjen og de som er under vil bli ignorert--

M    dataset.py
 2006-08-01 09:45:53 +00:00
Einar Ryeng 61da4f562e Added LICENCE (the pure GPL text copied verbatim from gnu.org) and README. 
Started to add a NetworkX plot in plots.py
 2006-07-31 14:57:24 +00:00
Einar Ryeng 87f87e36c8 * system/fluents.py: Fixed a bug where the the application tried to load 
a toolbar from None

 * system/plots.py: Fixed MainView.insert_view that was a no-op when in large
   view.

 * system/dataset.py: Changed __str__ of dataset to also show names of dimensions.
 2006-07-21 14:30:09 +00:00
Einar Ryeng aca9a47f56 Toolbars work again. 2006-06-01 13:51:16 +00:00
Einar Ryeng 0670c42bd4 Drag and drop from the navigator to the viewframes now work. 2006-05-29 19:14:48 +00:00
Einar Ryeng 581cef75ae Fixed plot things. A plot can only be attached to one view now. 2006-05-29 11:24:33 +00:00
Einar Ryeng 62c1d79dac Fixed large/small plot bug by adding ViewFrames that contains plots. 2006-05-22 21:43:24 +00:00
Truls Alexander Tangstad 9ab1ebe687 Small cleanup. 2006-05-09 14:16:22 +00:00
Truls Alexander Tangstad 443b18cea6 Made sure ordering of matrices are ok. 2006-05-09 14:13:09 +00:00
Truls Alexander Tangstad 86f89b6ffe Typo. 2006-05-09 13:51:14 +00:00
Truls Alexander Tangstad 5b1af849dc Implemented Limma function for Affy workflow. 
Extended ScatterPlot to take two datasets and updated code using it.
 2006-05-09 13:17:17 +00:00
Reidar Strand Hagen 033d4d5333 removed reorderability 2006-05-09 13:00:16 +00:00
Reidar Strand Hagen 184a49ef9a fixed ordering of multiple selected datasets 2006-05-09 12:22:50 +00:00
Truls Alexander Tangstad 0db25f1dd7 Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it. 2006-05-05 14:43:53 +00:00
Truls Alexander Tangstad 97f56f66ac Added text-input for contrast-matrix creator for affymetrics workflow. 2006-05-05 14:30:23 +00:00
Truls Alexander Tangstad 98445498b5 If argument 'selection' exists in function.run, pass current selection to it. 2006-05-05 13:10:54 +00:00
Truls Alexander Tangstad aa3a9ab619 Added automagic argument checking when running functions. 2006-05-05 10:10:03 +00:00
Truls Alexander Tangstad 9f7ee74189 Replaced function as button-attribute with lambda as button click handler. 2006-05-04 15:32:59 +00:00
Truls Alexander Tangstad fafa373e67 Added categorygetter for PhenotypeDataset. 2006-05-04 13:30:04 +00:00
Reidar Strand Hagen 338778d7b1 Functions which doesn't require inputs will now run with data selected 2006-05-03 14:47:55 +00:00
Truls Alexander Tangstad fb7128138e Fixed floats in phenotype importer. 
Added PrintFunction for debug-printing.
Added PhenotypeImportFunction to AffyWorkflow.
 2006-05-03 14:27:38 +00:00
Truls Alexander Tangstad b757da5929 Implemented PhenotypeDataset with tests. 2006-05-03 14:04:28 +00:00
Reidar Strand Hagen 56a6028547 Validation on number of inputs added 2006-05-03 11:52:54 +00:00
Truls Alexander Tangstad a613f0a3fa Made scatter use the new methods for index/identifier-conversion. 2006-05-03 11:40:12 +00:00
Reidar Strand Hagen 5b2223afcd Multiselection included. (Without input validation). 2006-05-03 11:11:45 +00:00
Truls Alexander Tangstad 91c1d8ea8b Fixed getting empty selections. 2006-05-02 15:40:54 +00:00
Truls Alexander Tangstad 56c07c6392 Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof. 
Also added tests.
 2006-05-02 14:06:48 +00:00
Truls Alexander Tangstad bda48169fe Fixed imports to make test run. 2006-05-02 13:21:24 +00:00
Truls Alexander Tangstad 2db1fc774e Removed whitespace. 2006-05-02 13:14:07 +00:00
Reidar Strand Hagen e363f1cd7d Signals for drag'n'drop added to new plots 2006-05-02 12:38:00 +00:00
Reidar Strand Hagen 4e4150236f Drag'n'drop for plots 2006-05-02 11:09:55 +00:00
Truls Alexander Tangstad a2d3a9d5cc Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input. 2006-04-28 11:44:55 +00:00
Reidar Strand Hagen fa3b1182bc Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py) 2006-04-27 15:51:25 +00:00
Truls Alexander Tangstad 8fd1f4ba83 Renamed module for affy workflow. 2006-04-27 15:06:01 +00:00
Truls Alexander Tangstad 5bb93af6f0 Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model. 
The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
 2006-04-27 14:38:48 +00:00
Reidar Strand Hagen c6ef6cdb07 Added auto-expand and auto-commit 2006-04-27 14:15:13 +00:00
Einar Ryeng 0df56248ee Removed obsolete module annotations. 2006-04-27 12:41:51 +00:00
Truls Alexander Tangstad fe0cf736f5 Created affy workflow. 2006-04-27 12:15:30 +00:00
Truls Alexander Tangstad 06805aa5e4 Changed colormap for LinePlot. 2006-04-27 12:05:20 +00:00
Truls Alexander Tangstad 3683f6c2e9 Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot. 2006-04-27 11:38:40 +00:00
Einar Ryeng 60c1d19a74 Get correct path for glade file based on the path of the system package. 2006-04-27 11:20:12 +00:00
Truls Alexander Tangstad 969006015a Added LinePlot used by Affy importer. 2006-04-27 11:03:11 +00:00
Einar Ryeng c95c18eb14 fluents.glade is now read from '/system/' under the directory of argv[0]. 2006-04-27 10:54:18 +00:00