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290 Commits

Author SHA1 Message Date
Arnar Flatberg 7c20e6d780 Added simple histogram 2007-01-17 15:40:33 +00:00
Einar Ryeng 1ffbf4f9e7 Added default implementation of set_current_selection in Plot, so that plots can safely
ignore selections without adding any code to the plot.

Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
Einar Ryeng 06591e301e Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset. 2007-01-17 14:06:07 +00:00
Einar Ryeng c3c6e85044 Added ImagePlot, which displays a dataset as an image. 2007-01-17 13:20:04 +00:00
Einar Ryeng 33c51505c4 Fixed the dataset loading so that it returns a correctly named Dataset. 2007-01-16 12:41:29 +00:00
Einar Ryeng f612dda72f Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
Arnar Flatberg ea4c0af6de fixed shift/control on lasso 2007-01-15 15:46:24 +00:00
Einar Ryeng cacb0a27b7 Added "Save dataset" option to navigator context menu. 2007-01-15 13:58:56 +00:00
Arnar Flatberg 476c830a5e lasso 2007-01-15 13:47:47 +00:00
Arnar Flatberg 0a38cb7d4a added lasso 2007-01-15 13:47:18 +00:00
Einar Ryeng ee447b688c Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
Einar Ryeng 58886726d8 Small updates. 2007-01-12 10:50:55 +00:00
Einar Ryeng ae3aa7e4aa Create Resnik distances and save them as ftsv. 2007-01-12 00:00:56 +00:00
Einar Ryeng 08b7d8dd85 Added function to save fluents tab separated values (ftsv) files. 2007-01-11 23:24:05 +00:00
Einar Ryeng e4d7f8e5a2 Resnik distances between GO terms work now. 2007-01-11 22:01:31 +00:00
Einar Ryeng 4b1d16ea78 Updated go-workflow. 2007-01-11 18:57:45 +00:00
Arnar Flatberg 3340b1b7ac Added support for union/intersection selections 2007-01-11 13:07:54 +00:00
Einar Ryeng d4f5a92010 Fixed typo. 2007-01-11 13:07:03 +00:00
Einar Ryeng 9274b044b7 Added read_ftsv in dataset.py. This method reads fluents tab separated values
files and returns a dataset.
2007-01-10 17:35:58 +00:00
Einar Ryeng 060732d980 More persumably non-working stuff. 2007-01-10 15:33:19 +00:00
Arnar Flatberg 1e0b99f283 small bugfix 2007-01-09 08:53:28 +00:00
Einar Ryeng fa047e0171 Committing non-working code that breaks go workflow. ;) 2007-01-08 21:13:22 +00:00
Einar Ryeng 6f050d4f10 Fixed error in docstring. 2007-01-08 19:31:19 +00:00
Einar Ryeng 1371bc1b1a Added function menu. Clicking the items still does not work, though. 2007-01-05 14:42:22 +00:00
Arnar Flatberg f7fe171896 Added Optionsdialog for pca and pls 2007-01-04 13:53:47 +00:00
Arnar Flatberg e08a8377ed Added Options and OptionsDialog 2007-01-04 13:53:03 +00:00
Einar Ryeng ebd4fdae7b Changed all places that load icons to do it through IconFactory. 2007-01-03 17:30:27 +00:00
Einar Ryeng 57e58e3910 Renamed IconFactory.get_icon() -> IconFactory.get() 2007-01-03 13:46:39 +00:00
Einar Ryeng d45ae4f480 Added icon factory to ensure that all icons are loaded exactly once. This also
cleans up code and saves X pixmap memory.
2007-01-03 13:34:40 +00:00
Einar Ryeng 75447d8840 Fixed function output bug. Datasets now appear as children of their first parent, also in gtk 2.10 2007-01-03 13:05:37 +00:00
Arnar Flatberg c34f23190b init 2007-01-02 15:10:59 +00:00
Arnar Flatberg 3ef5522dd0 First import of chemometrics utils 2006-12-18 11:59:12 +00:00
Einar Ryeng fac9346aad Added very hackish annotation count reader. 2006-12-15 12:53:27 +00:00
Arnar Flatberg 6aa1a1a817 Code upgraded to adjust for new version of networkx 2006-11-24 13:29:09 +00:00
Einar Ryeng 880509f8a9 Removed whitespace that broke plots. 2006-10-31 14:35:12 +00:00
Einar Ryeng fb77ddb549 Updated GO workflow. Options class test added. Reading the ontology takes too
long.
2006-10-26 16:51:42 +00:00
Arnar Flatberg 438dbd358b Dataset to colour of dragndrop in dataset + minor addjustments in networkplot 2006-10-25 12:56:21 +00:00
Einar Ryeng 0b30aeac6f Updated GO workflow. 2006-10-22 23:19:54 +00:00
Einar Ryeng 5491f5ce04 GO workflow. Does not work. 2006-10-22 15:31:36 +00:00
Arnar Flatberg de4a65e7b3 Added the svg format icon for move 2006-10-18 12:47:01 +00:00
Einar Ryeng cdb8d1b026 Removed unit test for workflows. The only test file in the directory is
for a workflow that is not used.
2006-10-17 17:53:52 +00:00
Einar Ryeng 1f9a400057 Added docstrings. 2006-10-17 17:50:42 +00:00
Einar Ryeng f7ededa451 Removed executable bit. 2006-10-17 17:50:18 +00:00
Einar Ryeng fe96772319 Expanded some documentation.
Added clean target to doc Makefile.
2006-10-17 17:18:46 +00:00
Einar Ryeng 5d4700da20 Removed some example rubbish that was placed after the GPL and had gotten
inside the file due to sloppy cut-n-paste.
2006-10-17 17:17:50 +00:00
Einar Ryeng fb3d9f2050 Added documentation directory with a Makefile to generate source code
documentation. This adds python-epydoc as a build dependency.
2006-10-17 15:06:24 +00:00
Einar Ryeng 4153f06c60 Added start-up script that sets PYTHONPATH and starts fluents. 2006-10-17 14:43:57 +00:00
Einar Ryeng 375d45e0cc Updated import statements, and removed the workflows pca_workflow and
affy_workflow.
2006-10-17 14:42:27 +00:00
Einar Ryeng 610812f265 Started to rename "system" package to "fluents". Repository will be broken
until this is completed.
2006-10-17 14:28:35 +00:00
Arnar Flatberg c40f9a2947 Added a LineViewPlot in GenerateData 2006-10-17 13:59:31 +00:00