Commit Graph

50 Commits

Author SHA1 Message Date
29509902df bugfix on shape 2007-01-31 11:57:59 +00:00
8e607c7b1a bugfixed scaling issues 2007-01-31 11:57:04 +00:00
f064b7134d Removed scale option added pack 2007-01-31 11:56:28 +00:00
1d5929f14c pls options glade file 2007-01-31 11:55:43 +00:00
ed2848beb3 Errors when identifers dont match shape, + whitespace 2007-01-31 11:54:54 +00:00
48bb47ec86 Bugfixed pca 2007-01-25 12:36:32 +00:00
aeb37cf4cd Added supportp for tall X in PCA 2007-01-25 12:17:16 +00:00
fa3722600c pca options glade file 2007-01-25 12:15:30 +00:00
61bfc236e6 Changed location of PCA options glade file. 2007-01-25 12:15:19 +00:00
7a204a3426 Added option page to option dialog 2007-01-25 12:10:18 +00:00
1c2c2c8895 Multiple lib changes 2007-01-25 11:58:10 +00:00
e03cc4ed4c Added a ScrolledWindow around the navigator. 2007-01-19 14:00:10 +00:00
7693f336ba Added a singleton project in the project module, so that the current project is
easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.

The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors. 

Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
f533344242 Added histogram in plot menu 2007-01-17 15:40:54 +00:00
7c20e6d780 Added simple histogram 2007-01-17 15:40:33 +00:00
1ffbf4f9e7 Added default implementation of set_current_selection in Plot, so that plots can safely
ignore selections without adding any code to the plot.

Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
06591e301e Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset. 2007-01-17 14:06:07 +00:00
c3c6e85044 Added ImagePlot, which displays a dataset as an image. 2007-01-17 13:20:04 +00:00
33c51505c4 Fixed the dataset loading so that it returns a correctly named Dataset. 2007-01-16 12:41:29 +00:00
f612dda72f Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
ea4c0af6de fixed shift/control on lasso 2007-01-15 15:46:24 +00:00
cacb0a27b7 Added "Save dataset" option to navigator context menu. 2007-01-15 13:58:56 +00:00
0a38cb7d4a added lasso 2007-01-15 13:47:18 +00:00
ee447b688c Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
08b7d8dd85 Added function to save fluents tab separated values (ftsv) files. 2007-01-11 23:24:05 +00:00
3340b1b7ac Added support for union/intersection selections 2007-01-11 13:07:54 +00:00
9274b044b7 Added read_ftsv in dataset.py. This method reads fluents tab separated values
files and returns a dataset.
2007-01-10 17:35:58 +00:00
6f050d4f10 Fixed error in docstring. 2007-01-08 19:31:19 +00:00
1371bc1b1a Added function menu. Clicking the items still does not work, though. 2007-01-05 14:42:22 +00:00
f7fe171896 Added Optionsdialog for pca and pls 2007-01-04 13:53:47 +00:00
e08a8377ed Added Options and OptionsDialog 2007-01-04 13:53:03 +00:00
ebd4fdae7b Changed all places that load icons to do it through IconFactory. 2007-01-03 17:30:27 +00:00
57e58e3910 Renamed IconFactory.get_icon() -> IconFactory.get() 2007-01-03 13:46:39 +00:00
d45ae4f480 Added icon factory to ensure that all icons are loaded exactly once. This also
cleans up code and saves X pixmap memory.
2007-01-03 13:34:40 +00:00
75447d8840 Fixed function output bug. Datasets now appear as children of their first parent, also in gtk 2.10 2007-01-03 13:05:37 +00:00
c34f23190b init 2007-01-02 15:10:59 +00:00
3ef5522dd0 First import of chemometrics utils 2006-12-18 11:59:12 +00:00
6aa1a1a817 Code upgraded to adjust for new version of networkx 2006-11-24 13:29:09 +00:00
880509f8a9 Removed whitespace that broke plots. 2006-10-31 14:35:12 +00:00
438dbd358b Dataset to colour of dragndrop in dataset + minor addjustments in networkplot 2006-10-25 12:56:21 +00:00
1f9a400057 Added docstrings. 2006-10-17 17:50:42 +00:00
f7ededa451 Removed executable bit. 2006-10-17 17:50:18 +00:00
fe96772319 Expanded some documentation.
Added clean target to doc Makefile.
2006-10-17 17:18:46 +00:00
fb3d9f2050 Added documentation directory with a Makefile to generate source code
documentation. This adds python-epydoc as a build dependency.
2006-10-17 15:06:24 +00:00
375d45e0cc Updated import statements, and removed the workflows pca_workflow and
affy_workflow.
2006-10-17 14:42:27 +00:00
610812f265 Started to rename "system" package to "fluents". Repository will be broken
until this is completed.
2006-10-17 14:28:35 +00:00
eefbc438bc The application is now a singleton. Added button to choose numer of
plots.
2006-10-16 19:57:40 +00:00
959d114774 Changed from using default python version to python2.4 to make the
program work on debian systems. The program does not currently support
python 2.3, and probably never will because of the set class that is a built-in
only from python 2.4 and up.
2006-04-27 10:06:30 +00:00
3e5be133ad Fixed the fluents -l bug. 2006-04-25 12:36:38 +00:00
251f9d6cf4 Added command line options to create a new project based on a given workflow. 2006-04-25 12:19:25 +00:00