tangstad
3683f6c2e9
Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot.
2006-04-27 11:38:40 +00:00
einarr
60c1d19a74
Get correct path for glade file based on the path of the system package.
2006-04-27 11:20:12 +00:00
tangstad
969006015a
Added LinePlot used by Affy importer.
2006-04-27 11:03:11 +00:00
einarr
c95c18eb14
fluents.glade is now read from '/system/' under the directory of argv[0].
2006-04-27 10:54:18 +00:00
einarr
959d114774
Changed from using default python version to python2.4 to make the
...
program work on debian systems. The program does not currently support
python 2.3, and probably never will because of the set class that is a built-in
only from python 2.4 and up.
2006-04-27 10:06:30 +00:00
einarr
a92be02e80
Added help index and bug report menu options.
2006-04-27 09:55:19 +00:00
einarr
2b0fdc186c
Fiexd the cancel button of the new project dialog. Closes #7
2006-04-26 14:01:46 +00:00
einarr
a0ad4bdf54
Fixed logger bugs. Closes #6
2006-04-26 13:29:10 +00:00
einarr
a9947daf14
Removed debug print statements.
2006-04-26 12:57:00 +00:00
tangstad
21edeecdc3
Add toolbar support to plots, with home made selection support <phew>.
2006-04-26 12:11:23 +00:00
einarr
490038d9bf
Refreshing workflows now works.
2006-04-25 18:06:21 +00:00
einarr
3e5be133ad
Fixed the fluents -l bug.
2006-04-25 12:36:38 +00:00
einarr
251f9d6cf4
Added command line options to create a new project based on a given workflow.
2006-04-25 12:19:25 +00:00
einarr
16820cf29e
The refresh button in the toolbar reloads the currently active workflow module.
2006-04-25 10:46:06 +00:00
tangstad
9d7a5ba769
Optimized plot selection.
2006-04-25 10:08:12 +00:00
einarr
359903c5ab
Made system a package.
2006-04-25 09:53:35 +00:00
einarr
32fdca837a
Moved the generation of workflow list from dialogs.py to workflow.py, as
...
a step in the process of making command line options to the program.
2006-04-24 21:52:18 +00:00
flatberg
cfbb76f25a
import * removed
2006-04-24 16:05:54 +00:00
einarr
ba2a769f01
Function names are now folders in the navigator.
2006-04-24 15:20:27 +00:00
einarr
179a2f88a9
The navigator now displays the plots and data in a tree that shows the ancestry information.
2006-04-24 14:52:21 +00:00
tangstad
6c72dec7fa
Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it.
2006-04-24 14:42:45 +00:00
tangstad
b807f27874
Fixed deselection in scatterplot.
2006-04-24 14:28:30 +00:00
tangstad
3fb7d06f4e
Fixed problem with plots accumulating.
2006-04-24 14:25:24 +00:00
tangstad
97e09b39a1
Added matrix-getter to Dataset.
...
Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
2006-04-24 14:07:34 +00:00
flatberg
cebf801cf6
bugix on creation of output data (E) from pca
2006-04-24 12:51:43 +00:00
tangstad
2bddb22867
Fixed navigator after changes in Dataset.
2006-04-24 11:39:11 +00:00
flatberg
6356e2ebd6
get_dim_names and get_identifiers added in dataset
2006-04-24 11:23:30 +00:00
flatberg
a2e4392a72
Complete rewrite of dataset class, with (all) the necessary updates
2006-04-24 09:53:07 +00:00
einarr
53d0228074
* Added the full text of the GNU GPL.
2006-04-22 22:46:10 +00:00
einarr
e762aef882
* system/dialogs.py: Oooops. Forgot this file in the previous commits. Well,
...
here it is, currently only with the New Project dialog.
2006-04-22 22:29:02 +00:00
einarr
2da88a5128
* Fixed a couple of menu items.
2006-04-22 21:56:30 +00:00
einarr
f484ec9945
* workflows/go_workflow.py: Added a workflow name to make it identifiable
...
in the "create project" druid.
2006-04-22 21:48:30 +00:00
einarr
efcdafe843
* The New project toolbar button now works. A druid will display the
...
available workflows and ask you to select one of them. There are still
a couple of unresolved issues, but it works, so i upload it to ease
the use of the program.
2006-04-22 21:46:44 +00:00
tangstad
357cd1a1a6
Removed workflow being dependent on rpy by putting the import within the run function of affymatrix import.
2006-04-22 20:48:44 +00:00
tangstad
26f16acc9c
Made sure pickling use protocol 2 to make it faster and the files smaller (binary).
2006-04-22 18:11:31 +00:00
tangstad
553bfbe1ae
Big cleanup of affymatrix importer. Now use E@exprs to get matrix from loaded data.
...
Also made row and colname import better by ensuring vector-handling, ensuring that getting single column/row data works without being converted into a single string instead of string in a list.
Removed ;1-hack and use NO_CONVERSION to ensure no extra computation is done when calculating r stuff.
Now AffyMatrix data is named as such.
2006-04-22 17:59:15 +00:00
tangstad
d26dd54f5b
Label verifier bugged when having generated labels.
2006-04-22 17:30:10 +00:00
tangstad
5a2a1afe91
Added pickling as a quick and dirty way of loading and saving data in einars workflow.
2006-04-22 16:27:33 +00:00
tangstad
d123f0e1c1
Added doc-string for CelFileImportFunction.
2006-04-22 15:59:19 +00:00
tangstad
e151e66898
Let log windows always follow changes/new entries.
2006-04-22 15:41:08 +00:00
tangstad
23914b2d1e
Added support for affy cel files.
2006-04-22 00:17:22 +00:00
tangstad
c601ad3966
Removed data information as function in workflow and added as default action on datasets double-clicked in navigator.
2006-04-21 15:02:13 +00:00
tangstad
efcd8c8587
Removed unused code.
2006-04-21 15:00:04 +00:00
tangstad
0918f0019b
Adding plots to panes is now done in row_activated_handler again, which makes it respond to double-clicks instead of just being selected in navigator.
2006-04-21 14:59:25 +00:00
tangstad
79481ed186
Added plot to output from test-function.
2006-04-21 14:58:42 +00:00
tangstad
832827bd5a
Removed unused code.
2006-04-21 14:45:01 +00:00
tangstad
95eb78bf0d
Use name of data in navigator.
2006-04-21 14:30:10 +00:00
tangstad
f3a65a3c4f
Can now select data in navigator by single-clicking or moving with keyboard, no need to activate (double-click etc.).
2006-04-21 14:29:08 +00:00
tangstad
07ac564668
Changed info function to show dialog instead of returning a view.
2006-04-21 14:12:18 +00:00
tangstad
c4f9f5c399
Created new workflow for showing information about a dataset as a view.
2006-04-21 13:04:31 +00:00
tangstad
einarr
flatberg