einarr
0858fd00e5
ftsv2csv - script to convert ftsv files to comma/tab separated values.
2009-02-09 22:12:39 +00:00
einarr
a1e57d7820
Smokers workflow automatically loads annotations on the go-terms and gene_ids dimensions.
2009-02-06 23:48:25 +00:00
einarr
ec6f2a1edc
Removed page size from spin boxes as this has become deprecated in GTK. There are still complaints from
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GTK/PyGTK, possibly due to PyGTK.
2009-02-06 22:24:33 +00:00
einarr
648817cf0e
Removed debug print line.
2009-02-06 22:23:24 +00:00
einarr
f07ce85e46
Changes to DAG plot.
2009-02-06 22:21:51 +00:00
einarr
5cfa505ae2
Fixed critical bug in txt2ftsv that made output datasets incorrect if more than one list was used.
2009-02-06 22:21:19 +00:00
einarr
6c20de11c9
Added options to txt2ftsv to chose between datasets and category datasets and whether or not to use sparse format.
2009-02-05 20:08:51 +00:00
einarr
b46c381c3e
Added txt2ftsv, a script to build ftsv category datasets from lists of identifiers.
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Usages is txt2ftsv [-d dimension] [-o output.ftsv] [-n dsname] [FILE1 [FILE2 ...]]
Input and output can be - for STDIN/STDOUT respectively. The script is primarily ment
as a hack to easily load selections. Data is only half sanitized.
2009-02-05 00:11:48 +00:00
einarr
fdf51c7c7f
Added box and bar plots to the right-click menu of datasets.
2008-12-07 23:31:03 +00:00
einarr
0a76e9c50f
Made plot background color lighter and removed two parameters that newer versions of matplotlib does not recognize.
2008-12-07 23:30:33 +00:00
einarr
2020c13b97
Fixing the colours of the overview image.
2008-12-06 14:37:10 +00:00
einarr
cc9416b3f7
GUI overview figure.
2008-12-06 00:58:35 +00:00
einarr
7e6bac20e1
FIXING STUFF!
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Rename should be complete or almost so.
2008-12-05 22:07:56 +00:00
einarr
1eabbc5c48
BREAKING STUFF!
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Renaming fluents to laydi
2008-12-05 21:51:08 +00:00
einarr
9c026a39d0
BREAKING STUFF!
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Renaming from fluents to laydi
2008-12-05 21:50:32 +00:00
einarr
27e4504bf6
BREAKING STUFF!
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Rename fluents to laydi.
2008-12-05 21:48:24 +00:00
einarr
45a06fab7f
debian/rules builds a bit smoother by running configure with both --root and --prefix.
2008-12-05 20:03:02 +00:00
einarr
d3eba1cd8b
Deleted doc/Makefile because it should be generated by configure.
2008-12-05 20:02:13 +00:00
einarr
5739de0a61
Name change to Laydi.
2008-12-05 20:01:02 +00:00
einarr
444e524f44
Name cange to Laydi.
2008-12-05 19:59:55 +00:00
einarr
c544c983e4
Added --root to allow deb builds to go smoother.
2008-12-05 19:59:21 +00:00
einarr
04b7cbb872
Lots of changes in structure to make it possible to package the program while
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still allowing workflows to be placed in several locations in the file system.
The installation procedure is now ./configure && make install configure will
run m4 on fluents/paths.py.m4, Makefile.m4 and doc/Makefile.m4 so that the
installation system and the program will know where some important directories
are located.
The paths.py.m4 and consequently also pahts.py files are just listings of
directories configured during install. I did this to separate these from all
other files so that as little as possible is touched by m4. It is still
necessary to do an install now to get the program to run in a clean checkout.
Workflows can now be placed anywhere in the system. This is done by setting the
workflowdir variable in the configuration file. All workflow directories,
separated by semicolons, are added to the python path.
The use of setup.py is now deprecated.
2008-12-05 00:12:49 +00:00
flatberg
b313cf29bc
Workflow updates
2008-02-29 16:23:57 +00:00
flatberg
1ad8b1a4f1
Fixed initial settings of axis in scatter
2008-02-29 16:16:17 +00:00
einarr
aa3ec28ec6
Switched hard-coded 3-s with a variable to determine size of viewport resizing
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dialog on toolbar.
2008-02-27 17:38:01 +00:00
flatberg
cb6d6b87cc
Whatnot
2008-02-08 14:58:46 +00:00
einarr
6b78629946
Save identifier list.
2008-02-07 18:15:39 +00:00
einarr
a380093afc
Added workflowdir to configuration file. workflowdir is a semicolon separated
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path of directories where workflows can be found.
2008-02-07 14:20:52 +00:00
einarr
e6a671a8c0
Added function to split datasets on selection.
2008-02-06 19:54:17 +00:00
flatberg
b37ebe568f
Fixed subdata method so the correct identifiers are stored
2008-02-06 16:29:02 +00:00
flatberg
e417547923
cc
2008-02-06 09:42:46 +00:00
flatberg
14d24d02c2
Demo workflow
2008-02-05 11:34:14 +00:00
einarr
848ba7f80c
Added drag-n-drop of matrices to idlist window to support ranking of selected variables.
2008-02-01 11:09:10 +00:00
einarr
f83a16ec37
Added new script.
2008-01-21 11:15:54 +00:00
flatberg
9e4f86c557
Fixed writing of nodepos to assert ds type + added subdata function
2008-01-15 11:41:53 +00:00
einarr
56a572c4ee
Removed unnecessary line from from_networkx.
2008-01-08 10:19:57 +00:00
flatberg
ab9c1ec84b
Sparse network support and nodepos read/write
2008-01-08 00:43:56 +00:00
flatberg
bf29661af9
Added convertion to sparse format in category dataset
2008-01-07 13:13:27 +00:00
flatberg
e6625c975f
bugfix
2008-01-07 12:44:08 +00:00
einarr
ca267920d8
Removed a couple of output datasets that did not work from pls.
2008-01-07 10:47:17 +00:00
flatberg
bed280353b
Added support for sparse category-dataset
2008-01-06 17:01:00 +00:00
flatberg
a84731da30
Support for icon assignment based on introspection
2007-12-17 18:52:49 +00:00
flatberg
163271fc17
Correct behavior of dataset icons and names under transformations
2007-12-17 18:50:27 +00:00
flatberg
083702b3b1
Fixed bug in color updating
2007-12-15 14:50:33 +00:00
flatberg
e80440472d
Fixed axes scaling error in scatterplot
2007-12-14 17:27:12 +00:00
einarr
4de9a58ae9
Made a LoadDataFunction instead of four almost identical specialiced Funcions.
2007-12-14 16:45:05 +00:00
flatberg
07477888bb
Fixed colormap bug
2007-12-14 15:43:35 +00:00
flatberg
5c2df5c163
Removed get_project nonsense
2007-12-14 15:42:37 +00:00
flatberg
6996aab2fa
Added log transform, support for multi selections in navigator-scatter, removed get_project-nonsense
2007-12-14 15:42:17 +00:00
einarr
a94c3ed1cc
Smoker workflow now loads data from correct path.
2007-12-14 15:15:01 +00:00
einarr
flatberg