pyblm/tests/test_lplsengine.py

"""Testing routines for the lpls engine.
"""
from math import sqrt as msqrt

from numpy.testing import *
set_package_path()
from pyblm import lpls
from numpy import dot, eye, random,asarray,empty
from numpy.random import rand, randn
from numpy.linalg import svd,norm
restore_path()

def blm_array(shape=(5, 10), comp=3, noise=0, seed=1, dtype='d'):
    assert(min(*shape) >= comp)
    random.seed(seed)
    t = rand(shape[0], comp)
    p = rand(shape[1], comp)
    x = dot(t, p.T)
    if noise>0:
        noise = noise*randn(*shape)
    return x + noise


class LplsTestCase(NumpyTestCase):
    def setUp(self):
        self.a = blm_array(shape=(5,10),noise=.1)
        self.b = blm_array(shape=(5,3), noise=.1)
        self.c = blm_array(shape=(10,10), noise=.1)
        self.nc = 2
    
    def check_single(self):
        self.a = asarray(self.a, dtype='f')
        self.b = asarray(self.b, dtype='f')
        self.c = asarray(self.c, dtype='f')
        self.do()

    def check_double(self):
        a = asarray(self.a, dtype='d')
        b = asarray(self.b, dtype='d')
        c = asarray(self.c, dtype='d')
        self.do()

    def do(self,*args):
        pass
        #raise NotImplementedError


class testAlphaZero(LplsTestCase):
    def do(self):
        #dat = lpls(self.a, self.b, self.c, self.nc, alpha=0.0)
        
        #assert_almost_equal(t1, t2)
        pass
    

class testAlphaOne(LplsTestCase):
    pass


class testZidentity(LplsTestCase):
    def do(self):
        I = eye(self.a.shape[1])
        dat = lpls(self.a, self.b, I, 2, alpha=1.0)
        dat2 = lpls(self.a, self.b, self.c, self.nc, alpha=0.0)
        assert_almost_equal(dat['T'], dat2['T'])


class testYidentity(LplsTestCase):
    def do(self):
        I = eye(self.b.shape[0], dtype=self.a.dtype)
        T0 = lpls(self.a, I, self.c, self.nc, alpha=0.0, mean_ctr=[-1,-1,-1])['T']
        u, s, vt = svd(self.a, 0)
        T = u*s
        assert_almost_equal(abs(T0), abs(T[:,:self.nc]),5)


class testWideX(LplsTestCase):
    pass


class testTallX(LplsTestCase):
    pass


class testWideY(LplsTestCase):
    pass


class testTallY(LplsTestCase):
    pass


class testWideZ(LplsTestCase):
    pass


class testTallZ(LplsTestCase):
    pass


class testRankDeficientX(LplsTestCase):
    pass


class testRankDeficientY(LplsTestCase):
    pass


class testRankDeficientZ(LplsTestCase):
    pass


class testCenterX(LplsTestCase):
    def do(self):
        T = lpls(self.a, self.b, self.c, self.nc, mean_ctr=[0,-1,-1])['T']
        assert_almost_equal(T.mean(0), 0)
        W = lpls(self.a, self.b, self.c, self.nc, alpha=0,mean_ctr=[1,-1,-1])['W']
        assert_almost_equal(W.mean(0), 0)
        

class testResiduals(NumpyTestCase):
    def setUp(self):
        self.a = blm_array(shape=(5,5),noise=0, comp=3)
        self.b = self.a.copy()
        self.c = self.a.copy().T
        self.nc = 3
    
    def check_single(self):
        self.a = asarray(self.a, dtype='f')
        self.b = asarray(self.b, dtype='f')
        self.c = asarray(self.c, dtype='f')
        self.do()

    def check_double(self):
        a = asarray(self.a, dtype='d')
        b = asarray(self.b, dtype='d')
        c = asarray(self.c, dtype='d')
        self.do()

    def do(self):
        dat = lpls(self.a, self.b, self.c, self.nc, mean_ctr=[-1,-1,-1])
        
        
class testOrthogonality(LplsTestCase):
    def do(self):
        dat = lpls(self.a, self.b, self.c, self.nc, mean_ctr=[0,0,0],scale='loads')
        T, W, L, E, F = dat['T'],dat['W'],dat['L'],dat['E'],dat['F']
        assert_almost_equal(dot(T.T,T), eye(T.shape[1]))
        for i,w in enumerate(W.T):
            W[:,i] = w/norm(w)
        assert_almost_equal(dot(W.T, W), eye(W.shape[1]), 3)
        assert_almost_equal(dot(T.T,E), 0, 3)
        assert_almost_equal(dot(T.T,F), 0, 3)
        

if __name__ == '__main__':
    NumpyTest().run()