141 lines
4.0 KiB
Python
Executable File
141 lines
4.0 KiB
Python
Executable File
#!/usr/bin/python
|
|
|
|
import sys
|
|
sys.path.append('system')
|
|
sys.path.append('workflows')
|
|
|
|
import pygtk
|
|
pygtk.require('2.0')
|
|
import gtk
|
|
import gtk.gdk
|
|
import gtk.glade
|
|
import gnome
|
|
import gnome.ui
|
|
import pango
|
|
import project
|
|
import workflow
|
|
import dataset
|
|
import logger
|
|
import plots
|
|
import navigator
|
|
import go_workflow
|
|
import scipy
|
|
|
|
PROGRAM_NAME = 'fluent'
|
|
VERSION = '0.1.0'
|
|
GLADEFILENAME = 'system/fluent.glade'
|
|
WF_BOX = 'workflow_vbox'
|
|
DATA_BOX = 'data_vbox'
|
|
|
|
class FluentApp:
|
|
|
|
def __init__(self):
|
|
# Application variables
|
|
self.project = project.Project()
|
|
|
|
# add test data ##################
|
|
x = scipy.rand(200,3)
|
|
def_list = [ ['samples',[]], ['genes',['a','b','c']] ]
|
|
test_data1 = dataset.Dataset(x,def_list)
|
|
self.project.add_dataset(test_data1)
|
|
#y = scipy.rand(200,2)
|
|
#def_list = [ ['samples',[]], ['yclasses',['C','N']] ]
|
|
#test_data2 = dataset.Dataset(y,def_list)
|
|
|
|
####################
|
|
|
|
|
|
self.navigator = navigator.NavigatorStore(self.project)
|
|
self.current_data = None
|
|
gtk.glade.set_custom_handler(self.custom_object_factory)
|
|
self.widget_tree = gtk.glade.XML(GLADEFILENAME, 'appwindow')
|
|
self.workflow = go_workflow.EinarsWorkflow(self)
|
|
|
|
def custom_object_factory(self, glade, function_name, widget_name,\
|
|
str1, str2, int1, int2):
|
|
handler = getattr(self, function_name)
|
|
return handler(str1, str2, int1, int2)
|
|
|
|
def create_logview(self, str1, str2, int1, int2):
|
|
# Set up log view
|
|
self.log_view = logger.LogView(logger.logger)
|
|
self.log_view.show()
|
|
return self.log_view
|
|
|
|
def create_main_view(self, str1, str2, int1, int2):
|
|
self.main_view = plots.MainView()
|
|
self.main_view.show()
|
|
return self.main_view
|
|
|
|
def create_small_view(self, str1, str2, int1, int2):
|
|
self.small_view = plots.SmallView()
|
|
self.small_view.show()
|
|
return self.small_view
|
|
|
|
def create_large_view(self, str1, str2, int1, int2,project):
|
|
self.large_view = plots.LargeView()
|
|
self.large_view.show()
|
|
return self.large_view
|
|
|
|
def create_navigator_view(self, str1, str2, int1, int2):
|
|
self.navigator_view = navigator.NavigatorView(self.navigator, self)
|
|
self.navigator_view.show()
|
|
return self.navigator_view
|
|
|
|
def show(self):
|
|
self.init_gui()
|
|
|
|
def init_gui(self):
|
|
self['appwindow'].set_size_request(800, 600)
|
|
|
|
# Set up workflow
|
|
wf_menu = workflow.WorkflowView(self.workflow)
|
|
wf_menu.show()
|
|
self['workflow_vbox'].pack_end(wf_menu)
|
|
|
|
# Set up plot toolbar
|
|
# self['plot_toolbar_dock'].add(plot.get_toolbar(self.app))
|
|
|
|
# Connect signals
|
|
signals = {'on_quit1_activate' : (gtk.main_quit),
|
|
'on_appwindow_delete_event' : (gtk.main_quit),
|
|
'on_view_log_activate' : (self.toggle_view_log),
|
|
'on_zoom_in_button_clicked' : (self.on_single_view),
|
|
'on_zoom_out_button_clicked' : (self.on_multiple_view)}
|
|
self.widget_tree.signal_autoconnect(signals)
|
|
|
|
# Log that we've set up the app now
|
|
logger.log('debug', 'Program started')
|
|
|
|
def change_plot(self, plot):
|
|
pt = self.widget_tree.get_widget('main_view')
|
|
pt.insert_view(plot)
|
|
|
|
def toggle_view_log(self, menu_item):
|
|
lw = self.widget_tree.get_widget('logview')
|
|
if menu_item.get_active():
|
|
lw.show()
|
|
else:
|
|
lw.unparent()
|
|
logger.log('debug', 'Toggling log window visibility')
|
|
|
|
def on_single_view(self, button):
|
|
nb = self.widget_tree.get_widget('main_view')
|
|
nb.goto_large()
|
|
|
|
def on_multiple_view(self, button):
|
|
nb = self.widget_tree.get_widget('main_view')
|
|
nb.goto_small()
|
|
|
|
def __getitem__(self, key):
|
|
return self.widget_tree.get_widget(key)
|
|
|
|
if __name__ == '__main__':
|
|
gnome.program_init(PROGRAM_NAME, VERSION)
|
|
app = FluentApp()
|
|
app.show()
|
|
gtk.main()
|
|
|
|
|
|
|