67 lines
2.2 KiB
Python
67 lines
2.2 KiB
Python
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import unittest
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import sys
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sys.path.append('../../')
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from fluents import annotations
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class AnnotationsTest(unittest.TestCase):
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def setUp(self):
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pass
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def testAddAnnotations(self):
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h = annotations.DictAnnotationHandler()
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annotations.set_dim_handler('go-terms', h)
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assert annotations.get_dim_handler('go-terms') == h
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assert annotations.get_dim_handler('foobar') == None
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def testGetDimAnnotations(self):
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h = annotations.DictAnnotationHandler()
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annotations.set_dim_handler('go-terms', h)
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d = {'GO:0': 'biological_process',
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'GO:1': 'foo',
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'GO:2': 'bar'}
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h.add_annotations('name', d)
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ann0 = annotations.get_dim_annotations('go-terms', 'name', [])
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assert ann0 == []
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ann1 = annotations.get_dim_annotations('go-terms', 'name', ['GO:0'])
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assert len(ann1) == 1
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assert ann1[0] == 'biological_process'
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ann2 = annotations.get_dim_annotations('go-terms', 'name', ['GO:1', 'baz'])
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assert len(ann2) == 2
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assert ann2 == ['foo', None]
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def testDictAnnotationHandler(self):
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h = annotations.DictAnnotationHandler()
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annotations.set_dim_handler('go-terms', h)
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d = {'GO:0': 'biological_process',
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'GO:1': 'foo',
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'GO:2': 'bar'}
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h.add_annotations('name', d)
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ann0 = h.get_annotations('name', [])
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assert ann0 == []
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ann1 = h.get_annotations('name', ['unexisting'])
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assert ann1 == [None]
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ann2 = h.get_annotations('name', ['unexisting'], 42)
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assert ann2 == [42]
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assert h.get_annotation_names() == ['name']
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def testReadAnnotationsFile(self):
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ann = annotations.read_annotations_file('../data/annotations.fann')
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assert ann != None
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assert ann == annotations.get_dim_handler('dim1')
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assert 'Ann1' in ann.get_annotation_names()
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assert 'Ann2' in ann.get_annotation_names()
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assert not ('Ann3' in ann.get_annotation_names())
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assert annotations.get_dim_annotations('dim1', 'Ann1', ['id1']) == ['11']
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if __name__ == '__main__':
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unittest.main()
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