#!/usr/bin/python import sys sys.path.append('system') sys.path.append('workflows') import pygtk pygtk.require('2.0') import gtk import gtk.gdk import gtk.glade import gnome import gnome.ui import pango import project import workflow import dataset import logger import plots import navigator import go_workflow import pca_workflow import scipy PROGRAM_NAME = 'fluent' VERSION = '0.1.0' GLADEFILENAME = 'system/fluent.glade' class FluentApp: def __init__(self): # Application variables self.project = project.Project() # add test data ################## x = scipy.rand(200,3) def_list = [ ['samples',[]], ['genes',['a','b','c']] ] test_data1 = dataset.Dataset(x,def_list) self.project.add_dataset(test_data1) #y = scipy.rand(200,2) #def_list = [ ['samples',[]], ['yclasses',['C','N']] ] #test_data2 = dataset.Dataset(y,def_list) #################### self.current_data = None gtk.glade.set_custom_handler(self.custom_object_factory) self.widget_tree = gtk.glade.XML(GLADEFILENAME, 'appwindow') self.workflow = pca_workflow.PCAWorkflow(self) self.workflow.add_project(self.project) def custom_object_factory(self, glade, function_name, widget_name,\ str1, str2, int1, int2): handler = getattr(self, function_name) return handler(str1, str2, int1, int2) def create_logview(self, str1, str2, int1, int2): # Set up log view self.log_view = logger.LogView(logger.logger) self.log_view.show() return self.log_view def create_main_view(self, str1, str2, int1, int2): self.main_view = plots.MainView() self.main_view.show() return self.main_view def create_small_view(self, str1, str2, int1, int2): self.small_view = plots.SmallView() self.small_view.show() return self.small_view def create_large_view(self, str1, str2, int1, int2,project): self.large_view = plots.LargeView() self.large_view.show() return self.large_view def create_navigator_view(self, str1, str2, int1, int2): tree = self.project.data_tree self.navigator_view = navigator.NavigatorView(self.project, self) self.navigator_view.show() return self.navigator_view def show(self): self.init_gui() def init_gui(self): self['appwindow'].set_size_request(800, 600) # Set up workflow wf_menu = workflow.WorkflowView(self.workflow) wf_menu.show() self['workflow_vbox'].pack_end(wf_menu) # Set up plot toolbar # self['plot_toolbar_dock'].add(plot.get_toolbar(self.app)) # Connect signals signals = {'on_quit1_activate' : (gtk.main_quit), 'on_appwindow_delete_event' : (gtk.main_quit), 'on_zoom_in_button_clicked' : (self.on_single_view), 'on_zoom_out_button_clicked' : (self.on_multiple_view)} self.widget_tree.signal_autoconnect(signals) # Log that we've set up the app now logger.log('debug', 'Program started') def change_plot(self, plot): pt = self.widget_tree.get_widget('main_view') pt.insert_view(plot) def on_single_view(self, button): nb = self.widget_tree.get_widget('main_view') nb.goto_large() def on_multiple_view(self, button): nb = self.widget_tree.get_widget('main_view') nb.goto_small() def __getitem__(self, key): return self.widget_tree.get_widget(key) if __name__ == '__main__': gnome.program_init(PROGRAM_NAME, VERSION) app = FluentApp() app.show() gtk.main()