#!/usr/bin/python import sys from laydi import dataset from getopt import getopt def read_options(): short_opts = "" long_opts = [] options, params = getopt(sys.argv[1:], short_opts, long_opts) return params def write_csv(fd, ds): rowdim, coldim = ds.get_dim_name() rowids = ds.get_identifiers(rowdim, sorted=True) colids = ds.get_identifiers(coldim, sorted=True) x = ds.asarray() ## Print ID row print >> fd, rowdim, for id in colids: print >> fd, id, print >> fd ## Print column IDs and data for i, row in enumerate(rowids): print >> fd, row, for j in range(len(colids)): print >> fd, x[i,j], print >> fd if __name__ == "__main__": params = read_options() input_fn = params[0] if len(params) == 2: output_fn = params[1] else: name, ext = input_fn.rsplit('.', 1) output_fn = name + '.csv' ds = dataset.read_ftsv(input_fn) output_fd = open(output_fn, 'w') write_csv(output_fd, ds) output_fd.close()