from sets import Set as set set.update = set.union_update class AnnotationsException(Exception): pass class Annotations: def __init__(self, *dimensions): """ Initializes a new Annotation with the given dimension labels. dimensions is a list of dimension labels. """ if len(dimensions) != 2: msg = 'Annotations only supports two dimensions.' raise AnnotationsException(msg) self.dimensions = {} for d in dimensions: self.dimensions[d] = {} def add_annotations(self, dim, id, ann_dim, annotations): """ Adds new annotations. dim: the dimension in which the new data should be added. id: the identifier that should be annotated. ann_dim: the dimension of the annotations to id. annotations: the new annotations to id. Returns the total set of annotations to id. """ if not self.has_dimension(dim): msg = 'Annotations object does not contain dimension %s' % dim raise AnnotationsException(msg) if not self.has_dimension(ann_dim): msg = 'Annotations object does not contain dimension %s' % ann_dim raise AnnotationsException(msg) for a in annotations: if not self.dimensions[ann_dim].has_key(a): self.dimensions[ann_dim][a] = set() self.dimensions[ann_dim][a].add(id) if not self.dimensions[dim].has_key(id): self.dimensions[dim][id] = set() self.dimensions[dim][id].update(annotations) return self.dimensions[dim][id] def get_annotations(self, dim, id, ann_dim): """Returns all annotations to id. dim: the dimension where id can be found. id: the id to retrieve annotations for. """ if not self.has_dimension(dim): msg = 'Annotations object does not contain dimension %s' % dim raise AnnotationsException(msg) if self.dimensions[dim].has_key(id): return self.dimensions[dim][id] return set() def has_dimension(self, dim): """ Retuns true if the Annotations object indexes dim. """ return self.dimensions.has_key(dim)