import gtk import gobject import plots import time import laydi from logger import logger import dataset, plots, projectview, workflow, main import scipy class NavigatorView (gtk.TreeView): """The NavigatorView is a tree view of the project. There is always one NavigatorView, that shows the functions, plots and datasets in the current project. """ def __init__(self): if main.projectview: self.data_tree = main.projectview.data_tree else: self.data_tree = None gtk.TreeView.__init__(self) # Various properties self.set_enable_tree_lines(True) self.set_headers_visible(False) self.get_hadjustment().set_value(0) # Selection Mode self.get_selection().set_mode(gtk.SELECTION_MULTIPLE) self.get_selection().connect('changed',self.on_selection_changed) self._previous_selection = [] # Setting up TextRenderers etc self.connect('row_activated', self.on_row_activated) self.connect('cursor_changed', self.on_cursor_changed) # Activate context menu self.menu = NavigatorMenu(self) self.connect('popup_menu', self.popup_menu) self.connect('button_press_event', self.on_mouse_event) self.textrenderer = textrenderer = gtk.CellRendererText() pixbufrenderer = gtk.CellRendererPixbuf() self.object_col = gtk.TreeViewColumn('Object') self.object_col.pack_start(pixbufrenderer,expand=False) self.object_col.pack_start(textrenderer,expand=False) self.object_col.set_attributes(textrenderer, cell_background=3, foreground=4, text=0) self.object_col.set_attributes(pixbufrenderer, pixbuf=5) self.append_column(self.object_col) # send events to plots / itself self.enable_model_drag_source(gtk.gdk.BUTTON1_MASK, [("GTK_TREE_MODEL_ROW", gtk.TARGET_SAME_APP, 7)], gtk.gdk.ACTION_LINK | gtk.gdk.ACTION_MOVE) self.connect("drag-data-get",self.slot_drag_data) logger.debug('Initializing navigator window.') def slot_drag_data(self, treeview, context, selection, target_id, etime): """Sets the data for a drag event.""" treeselection = treeview.get_selection() model, paths = treeselection.get_selected_rows() if paths: self.data_tree.drag_data_get(paths[0], selection) def add_projectview(self, projectview): """Dependency injection.""" self.data_tree = projectview.data_tree self.set_model(projectview.data_tree) self.data_tree.connect('row-changed',self.on_row_changed) def on_selection_changed(self, selection): """Update the list of currently selected datasets.""" # update prev selection right away in case of multiple events model, paths = selection.get_selected_rows() if not paths: # a plot is marked: do nothing return tmp = self._previous_selection self._previous_selection = paths tree = self.data_tree # set timestamp on newly selected objects [tree.set_value(tree.get_iter(path), 6, time.time()) for path in paths if path not in tmp] objs = [tree.get_iter(path) for path in paths] objs = [(tree[iter][6], tree[iter][2]) for iter in objs] objs.sort() objs = [obj for timestamp, obj in objs] if objs and isinstance(objs[0], dataset.Dataset): logger.debug('Selecting dataset') main.projectview.current_data = objs else: logger.debug('Deselecting dataset') main.projectview.current_data = [] def on_row_changed(self, treestore, pos, iter): """Set correct focus and colours when rows have changed.""" obj = treestore[iter][2] obj_type = treestore[iter][1] if not (obj or obj_type): return self.expand_to_path(pos) if isinstance(obj, dataset.Dataset): self.set_cursor(pos) self.grab_focus() def on_row_activated(self, widget, path, column): tree_iter = self.data_tree.get_iter(path) obj = self.data_tree.get_value(tree_iter, 2) if isinstance(obj, plots.Plot): logger.debug('Activating plot') main.application.change_plot(obj) elif isinstance(obj, dataset.Dataset): pass elif obj == None: children = [] i = self.data_tree.iter_children(tree_iter) while i: child = self.data_tree.get(i, 2)[0] if isinstance(child, plots.Plot): children.append(child) i = self.data_tree.iter_next(i) main.application.change_plots(children) else: t = type(obj) logger.notice('Activated datatype was %s. Don\'t know what to do.' % t) def popup_menu(self, *rest): self.menu.popup(None, None, None, 0, 0) def on_mouse_event(self, widget, event): path = widget.get_path_at_pos(int(event.x), int(event.y)) if path: iter = self.data_tree.get_iter(path[0]) obj = self.data_tree.get_value(iter, 2) else: iter = None obj = None if isinstance(obj, dataset.Dataset): self.menu.set_dataset(obj, iter) else: self.menu.set_dataset(None, iter) if event.button == 3: self.menu.popup(None, None, None, event.button, event.time) def on_cursor_changed(self, widget): """Update statusbar to contain dataset information. Lists the dimensions of a dataset in the statusbar of the program if a dataset is focused in the navigator. """ path = widget.get_cursor()[0] tree_iter = self.data_tree.get_iter(path) obj = self.data_tree.get_value(tree_iter, 2) if isinstance(obj, dataset.Dataset): dims = zip(obj.get_dim_name(), obj.shape) dim_text = ", ".join(["%s (%d)" % dim for dim in dims]) else: dim_text = "" main.application['appbar1'].push(dim_text) class NavigatorMenu(gtk.Menu): def __init__(self, navigator): gtk.Menu.__init__(self) self.navigator = navigator self.dataset = None self.tree_iter = None # Populate main menu self.load_item = gtk.MenuItem('Load dataset') self.load_item.connect('activate', self.on_load_dataset, navigator) self.append(self.load_item) self.load_item.show() self.save_item = gtk.MenuItem('Save dataset') self.save_item.connect('activate', self.on_save_dataset, navigator) self.append(self.save_item) self.save_item.show() self.delete_item = gtk.MenuItem('Delete') self.delete_item.connect('activate', self.on_delete, navigator) self.append(self.delete_item) self.delete_item.show() self.split_item = gtk.MenuItem('Split on selection') self.split_item.connect('activate', self.on_split, navigator) self.append(self.split_item) self.split_item.show() # Build transform sub menu self.trans_menu = gtk.Menu() self.trans_tr_item = gtk.MenuItem('Transpose') self.trans_tr_item.connect('activate', self.on_transpose, navigator) self.trans_menu.append(self.trans_tr_item) self.trans_tr_item.show() self.trans_stdr_item = gtk.MenuItem('Std. rows') self.trans_stdr_item.connect('activate', self.on_standardise_rows, navigator) self.trans_menu.append(self.trans_stdr_item) self.trans_stdr_item.show() self.trans_stdc_item = gtk.MenuItem('Std. cols') self.trans_stdc_item.connect('activate', self.on_standardise_cols, navigator) self.trans_menu.append(self.trans_stdc_item) self.trans_stdc_item.show() self.trans_log_item = gtk.MenuItem('Log') self.trans_log_item.connect('activate', self.on_log, navigator) self.trans_menu.append(self.trans_log_item) self.trans_log_item.show() self.trans_item = gtk.MenuItem("Transformation") self.append(self.trans_item) self.trans_item.set_submenu(self.trans_menu) self.trans_item.show() # Build plot sub menu self.plot_menu = gtk.Menu() self.plot_image_item = gtk.MenuItem('Image Plot') self.plot_image_item.connect('activate', self.on_plot_image, navigator) self.plot_menu.append(self.plot_image_item) self.plot_image_item.show() self.plot_hist_item = gtk.MenuItem('Histogram') self.plot_hist_item.connect('activate', self.on_plot_hist, navigator) self.plot_menu.append(self.plot_hist_item) self.plot_hist_item.show() self.plot_scatter_item = gtk.MenuItem('Scatter') self.plot_scatter_item.connect('activate', self.on_plot_scatter, navigator) self.plot_menu.append(self.plot_scatter_item) self.plot_scatter_item.show() self.plot_line_item = gtk.MenuItem('Line view') self.plot_line_item.connect('activate', self.on_plot_line, navigator) self.plot_menu.append(self.plot_line_item) self.plot_line_item.show() self.plot_bar_item = gtk.MenuItem('Bar Plot') self.plot_bar_item.connect('activate', self.on_plot_bar, navigator) self.plot_menu.append(self.plot_bar_item) self.plot_bar_item.show() self.plot_box_item = gtk.MenuItem('Box Plot') self.plot_box_item.connect('activate', self.on_plot_box, navigator) self.plot_menu.append(self.plot_box_item) self.plot_box_item.show() self.plot_item = gtk.MenuItem('Plot') self.append(self.plot_item) self.plot_item.set_submenu(self.plot_menu) self.plot_item.show() def set_dataset(self, ds, it): self.dataset = ds self.tree_iter = it if ds == None: self.save_item.set_property('sensitive', False) self.plot_item.set_property('sensitive', False) self.trans_item.set_property('sensitive', False) else: self.save_item.set_property('sensitive', True) self.plot_item.set_property('sensitive', True) self.trans_item.set_property('sensitive', True) def load_dataset(self, filename): """Load the dataset from the given file and add it to the project.""" ds = dataset.read_ftsv(filename) if isinstance(ds, dataset.GraphDataset): icon = laydi.icon_factory.get("graph_dataset") elif isinstance(ds, dataset.CategoryDataset): icon = laydi.icon_factory.get("category_dataset") else: icon = laydi.icon_factory.get("dataset") main.projectview.add_dataset(ds) main.projectview.data_tree_insert(None, ds.get_name(), ds, None, "black", icon) def on_load_dataset(self, item, navigator): # Set up file chooser. dialog = gtk.FileChooserDialog('Load dataset') dialog.set_action(gtk.FILE_CHOOSER_ACTION_OPEN) dialog.add_buttons(gtk.STOCK_CANCEL, gtk.RESPONSE_CANCEL, gtk.STOCK_OPEN, gtk.RESPONSE_OK) dialog.set_select_multiple(True) dialog.set_current_folder(main.project.datadir) retval = dialog.run() if retval in [gtk.RESPONSE_CANCEL, gtk.RESPONSE_DELETE_EVENT]: pass elif retval == gtk.RESPONSE_OK: for filename in dialog.get_filenames(): self.load_dataset(filename) else: print "unknown; ", retval dialog.destroy() def on_save_dataset(self, item, navigator): dialog = gtk.FileChooserDialog('Save dataset') dialog.set_action(gtk.FILE_CHOOSER_ACTION_SAVE) dialog.add_buttons(gtk.STOCK_CANCEL, gtk.RESPONSE_CANCEL, gtk.STOCK_SAVE, gtk.RESPONSE_OK) dialog.set_current_name("%s.ftsv" % self.dataset.get_name()) retval = dialog.run() if retval in [gtk.RESPONSE_CANCEL, gtk.RESPONSE_DELETE_EVENT]: logger.debug("Cancelled save dataset") elif retval == gtk.RESPONSE_OK: logger.debug("Saving dataset as: %s" % dialog.get_filename()) fd = open(dialog.get_filename(), 'w') dataset.write_ftsv(fd, self.dataset) fd.close() else: print "unknown; ", retval dialog.destroy() def on_delete(self, item, navigator): tm, rows = navigator.get_selection().get_selected_rows() iters = [tm.get_iter(r) for r in rows] iters.reverse() for i in iters: main.projectview.delete_data(i) # tm.remove(i) def on_plot_image(self, item, navigator): plot = plots.ImagePlot(self.dataset, name='Image Plot') icon = laydi.icon_factory.get("line_plot") main.projectview.data_tree_insert(self.tree_iter, 'Image Plot', plot, None, "black", icon) # fixme: image plot selections are not well defined #plot.set_selection_listener(projectview.set_selection) #projectview._selection_observers.append(plot) def on_plot_hist(self, item, navigator): projectview = main.projectview plot = plots.HistogramPlot(self.dataset, name='Histogram') icon = laydi.icon_factory.get("line_plot") projectview.data_tree_insert(self.tree_iter, 'Histogram', plot, None, "black", icon) plot.set_selection_listener(projectview.set_selection) projectview._selection_observers.append(plot) def on_plot_scatter(self, item, navigator): projectview = main.projectview datasets = main.projectview.current_data ds_major = datasets[0] dims_major = ds_major.get_dim_name() ids_major = ds_major.get_identifiers(dims_major[1], sorted=True) if len(datasets) > 1: # If there is more than one active dataset -> try to use the two first ds_minor = datasets[1] dims_minor = ds_minor.get_dim_name() if dims_minor != dims_major or ds_minor.shape[0] != ds_major.shape[0]: # the selected datasets are not matched -> use initial selected ds_minor = ds_major else: #Only one dataset selected ds_minor = ds_major plot = plots.ScatterPlot(ds_major, ds_minor, dims_major[0], dims_major[1], ids_major[0], ids_major[1], name='Scatter (%s)' % ds_major.get_name()) plot.add_axes_spin_buttons(len(ids_major), 0, 1) icon = laydi.icon_factory.get("line_plot") projectview.data_tree_insert(self.tree_iter, 'Scatter', plot, None, "black", icon) plot.set_selection_listener(projectview.set_selection) projectview._selection_observers.append(plot) def on_plot_line(self, item, navigator): projectview = main.projectview ds = self.dataset dims = ds.get_dim_name() ids = ds.get_identifiers(dims[1]) plot = plots.LineViewPlot(ds, name='Line (%s)' % ds.get_name()) icon = laydi.icon_factory.get("line_plot") projectview.data_tree_insert(self.tree_iter, 'Line view', plot, None, "black", icon) plot.set_selection_listener(projectview.set_selection) projectview._selection_observers.append(plot) def on_plot_bar(self, item, navigator): projectview = main.projectview ds = self.dataset dims = ds.get_dim_name() ids = ds.get_identifiers(dims[1]) plot = plots.BarPlot(ds, name='Bar (%s)' % ds.get_name()) icon = laydi.icon_factory.get("line_plot") projectview.data_tree_insert(self.tree_iter, 'Bar plot', plot, None, "black", icon) plot.set_selection_listener(projectview.set_selection) projectview._selection_observers.append(plot) def on_plot_box(self, item, navigator): projectview = main.projectview ds = self.dataset dims = ds.get_dim_name() ids = ds.get_identifiers(dims[1]) plot = plots.BoxPlot(ds, name='Box (%s)' % ds.get_name()) icon = laydi.icon_factory.get("line_plot") projectview.data_tree_insert(self.tree_iter, 'Box plot', plot, None, "black", icon) plot.set_selection_listener(projectview.set_selection) projectview._selection_observers.append(plot) def on_transpose(self, item, navigator): projectview = main.projectview ds = self.dataset.transpose() ds._name = ds._name + ".T" icon = laydi.icon_factory.get(ds) projectview.data_tree_insert(self.tree_iter, ds.get_name(), ds, None, "black", icon) def on_standardise_rows(self, item, navigator): projectview = main.projectview ds = self.dataset.copy() ds._name = self.dataset._name + ".rsc" axis = 1 ds._array = ds.asarray()/scipy.expand_dims(ds.asarray().std(axis), axis) icon = laydi.icon_factory.get(ds) projectview.data_tree_insert(self.tree_iter, ds.get_name(), ds, None, "black", icon) def on_standardise_cols(self, item, navigator): projectview = main.projectview ds = self.dataset.copy() ds._name = self.dataset._name + ".csc" axis = 0 ds._array = ds.asarray()/scipy.expand_dims(ds.asarray().std(axis), axis) icon = laydi.icon_factory.get(ds) projectview.data_tree_insert(self.tree_iter, ds.get_name(), ds, None, "black", icon) def on_log(self, item, navigator): projectview = main.projectview try: if not scipy.all(self.dataset.asarray()>0): raise ValueError except: logger.log('warning', 'Datasets needs to be strictly positive for a log transform') return ds = self.dataset.copy() ds._array = scipy.log(ds.asarray()) icon = laydi.icon_factory.get(ds) ds._name = ds._name + ".log" projectview.data_tree_insert(self.tree_iter, ds.get_name(), ds, None, "black", icon) def on_split(self, item, navigator): if self.dataset is None: logger.warn("Only datasets can be split.") return dim = self.dataset.get_dim_name(0) projectview = main.projectview sel_ids = set(projectview.get_selection()[dim]) sel_ds = self.dataset.subdata(dim, sel_ids) unsel_ids = set(self.dataset.get_identifiers(dim)) - set(sel_ids) unsel_ds = self.dataset.subdata(dim, unsel_ids) icon = laydi.icon_factory.get(self.dataset) projectview.data_tree_insert(self.tree_iter, 'Selected', sel_ds, None, "black", icon) projectview.data_tree_insert(self.tree_iter, 'Unselected', unsel_ds, None, "black", icon)