ebe7621817
some biocondoctur utilities
2007-05-06 13:51:06 +00:00
a0faed2614
Forgot some ...
2007-04-24 17:21:40 +00:00
34ae426c86
Added correlation plot and moved colorbar to plots
2007-04-24 17:17:31 +00:00
90bb25eb55
added default mappable to None
2007-04-24 17:16:34 +00:00
31ac569c3e
Added colorbar shortcut
2007-04-24 17:04:29 +00:00
b02773b4e6
pls loading plot now have correct name
2007-03-15 10:38:52 +00:00
1c48315a0f
Added debug output.
2007-03-14 17:26:40 +00:00
438a268b1d
Inserted visible header sort
2007-03-14 16:34:50 +00:00
3d2492578e
whitespace
2007-03-14 16:33:54 +00:00
3bd21ab089
metric support
2007-03-14 16:33:16 +00:00
48047f1395
Moved lots of stuff back to sandbox
2007-03-14 16:32:49 +00:00
7f1f639ee7
Updates on metric, whitespace
2007-03-14 16:31:25 +00:00
22f6e3284c
whitespace
2007-03-14 16:30:18 +00:00
818dc0b2b0
added a logger for constructor calls
2007-03-14 16:27:23 +00:00
212da78933
correct comp update
2007-03-14 16:17:21 +00:00
00dd3e8d9d
added validation on identifiers input
2007-03-14 16:06:16 +00:00
9cbefb5705
in write_ftsv: adjusted so it splits specifically on tab, whitespace allowed in annotations
2007-03-14 10:24:49 +00:00
28e6c52f78
Fixed bug with hidden dimensions.
2007-03-01 15:06:33 +00:00
d699afa6a5
fixed bu when trying to drag anything over an empty view
2007-03-01 15:03:53 +00:00
6101bf850c
Changed CategoryDataset ftsv files to be written with 0 and 1 instead of True and False.
2007-02-28 16:33:11 +00:00
89636962a7
Added Workflow.get_data_file_name() which returns the full path to a given
...
data file, or None if the file does not exist. This is tested in the test
workflow.
2007-02-28 14:56:24 +00:00
281337251d
Added selection of lines in network plot
2007-02-27 21:19:24 +00:00
78183df0e9
Alignment of function boxes
2007-02-27 18:14:58 +00:00
b754a5df44
Update from change of plots/view
2007-02-27 16:31:18 +00:00
61cfd00558
Division of plots -> view/plots
2007-02-27 16:28:03 +00:00
059cddbc16
Division of plots -> view/plots
2007-02-27 16:27:39 +00:00
686a1fdcd1
network/venn plot now maximizes the space available
2007-02-27 15:42:27 +00:00
d27278241c
oops ... (broken code fixed)
2007-02-27 15:08:00 +00:00
4de65f1085
Clean up
2007-02-27 15:05:21 +00:00
f73a6db0ee
Added ctrl+arrows to navigate between plots.
2007-02-26 23:00:25 +00:00
eacb44f32a
Removed "Edit" menu.
2007-02-26 22:12:32 +00:00
d040f11c2f
Added identifier list update on selection changed.
2007-02-26 18:02:34 +00:00
537dc9f0ec
Cleanup of selection browser module. Added comments, fixed some bits of code.
2007-02-26 14:35:31 +00:00
c0bbe24c39
No selections in scatter marker now updates to no selection instead of last selection
2007-02-26 12:11:28 +00:00
a6fbef9cfa
scatter plot selected markers are now on top (visible)
2007-02-26 11:20:02 +00:00
2f60d0663d
Clean up of import statements
2007-02-26 09:08:50 +00:00
5ed602f355
Lots of changes .... (new selector, mode updates, histogram selection, ++)
2007-02-26 08:00:36 +00:00
3ee8439e07
Added selection listeners to plots in context menu
2007-02-26 07:58:33 +00:00
a614908436
Size of current selection is now updated in details
2007-02-23 11:12:03 +00:00
41e8ed511b
Fixed dim_cursor_changed to to use the correct treemodel, and added show/hide on selection details
2007-02-23 10:46:04 +00:00
0d8702bb71
added show/hide on dimensions
2007-02-21 19:57:27 +00:00
2bae169f38
Annotation display now works (sort of).
2007-02-21 16:39:04 +00:00
28aca8c621
added project to selection controller
2007-02-21 13:57:48 +00:00
8c03338b75
hypergeometric test (scipy version has errors)
2007-02-21 13:03:51 +00:00
48165d1aed
Updated the selection controller with sorting ++
2007-02-21 12:41:37 +00:00
f0b2660813
Selection listeners are now notified when new dimensions are added (because
...
this implies that an empty selection is made on the new dimension).
2007-02-21 12:05:08 +00:00
5800e7e362
Fixed a bug that prevented the first selection on a dimension to come from a
...
dataset.
2007-02-21 11:49:43 +00:00
a5955f9b59
Now updates the DimListConroller when a CategoryDataset is drag'n'dropped into
...
SelectionListController.
2007-02-21 11:43:00 +00:00
c5c4f13a19
Fixed some excessively long lines.
2007-02-21 11:08:20 +00:00
2cc4e86b0a
Split selections.py into three different controller classes, one for each list. There
...
is still some work to be done, and bugs to be fixed.
2007-02-21 00:00:26 +00:00
a2195bcb4b
Added Import annotations option.
2007-02-16 11:23:29 +00:00
6809c1a454
Added some annotation support in selections.py, including the beginning of a
...
menu option to add an arbitrary annotation alongside identifiers.
2007-02-15 22:57:40 +00:00
b17f04466b
Added read_annotations_file() which reads a tab delimited file containing
...
annotations to identifiers along a dimension.
2007-02-15 22:42:55 +00:00
4319e8630e
fixed error in typechecking
2007-02-15 13:36:36 +00:00
fc33c2dbfc
factored out packer
2007-02-09 14:02:58 +00:00
15c89fb9b5
Factored out packer
...
A packer.py
2007-02-09 14:02:39 +00:00
7eb13b14cb
Removed resolution arg to Circle to avoid construction of a circlepolygon (deprecated)
2007-02-02 12:21:19 +00:00
320cd97512
Removed noise generating print statements.
2007-01-31 14:58:37 +00:00
75b66914fd
Fixed bug by removing hardcoded filename.
2007-01-31 14:56:43 +00:00
74cb30428c
Added annotations to identifiers, and converted the unused annotationtest.py to
...
test the new module.
2007-01-31 14:19:23 +00:00
1863bfc564
Save plot enabled
2007-01-31 13:26:46 +00:00
d1205ae67f
Removed colorbar
2007-01-31 13:01:09 +00:00
37feb1c25b
bugfix on P scale
2007-01-31 13:00:36 +00:00
2cfa3ca415
spin on a/o, colorbar on keypress
2007-01-31 12:59:21 +00:00
63be80aa92
pls options added
2007-01-31 12:03:11 +00:00
088f180b5d
Barplot, lots of changes in scatter, disabled modes, removed labels, bugfix on lasso
2007-01-31 12:02:11 +00:00
e716db3fd2
Added center option to validation, + naming updates
2007-01-31 11:59:23 +00:00
29509902df
bugfix on shape
2007-01-31 11:57:59 +00:00
8e607c7b1a
bugfixed scaling issues
2007-01-31 11:57:04 +00:00
f064b7134d
Removed scale option added pack
2007-01-31 11:56:28 +00:00
1d5929f14c
pls options glade file
2007-01-31 11:55:43 +00:00
ed2848beb3
Errors when identifers dont match shape, + whitespace
2007-01-31 11:54:54 +00:00
48bb47ec86
Bugfixed pca
2007-01-25 12:36:32 +00:00
aeb37cf4cd
Added supportp for tall X in PCA
2007-01-25 12:17:16 +00:00
fa3722600c
pca options glade file
2007-01-25 12:15:30 +00:00
61bfc236e6
Changed location of PCA options glade file.
2007-01-25 12:15:19 +00:00
7a204a3426
Added option page to option dialog
2007-01-25 12:10:18 +00:00
1c2c2c8895
Multiple lib changes
2007-01-25 11:58:10 +00:00
e03cc4ed4c
Added a ScrolledWindow around the navigator.
2007-01-19 14:00:10 +00:00
7693f336ba
Added a singleton project in the project module, so that the current project is
...
easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.
The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors.
Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
f533344242
Added histogram in plot menu
2007-01-17 15:40:54 +00:00
7c20e6d780
Added simple histogram
2007-01-17 15:40:33 +00:00
1ffbf4f9e7
Added default implementation of set_current_selection in Plot, so that plots can safely
...
ignore selections without adding any code to the plot.
Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
06591e301e
Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset.
2007-01-17 14:06:07 +00:00
c3c6e85044
Added ImagePlot, which displays a dataset as an image.
2007-01-17 13:20:04 +00:00
33c51505c4
Fixed the dataset loading so that it returns a correctly named Dataset.
2007-01-16 12:41:29 +00:00
f612dda72f
Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
...
Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
ea4c0af6de
fixed shift/control on lasso
2007-01-15 15:46:24 +00:00
cacb0a27b7
Added "Save dataset" option to navigator context menu.
2007-01-15 13:58:56 +00:00
0a38cb7d4a
added lasso
2007-01-15 13:47:18 +00:00
ee447b688c
Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
...
adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
08b7d8dd85
Added function to save fluents tab separated values (ftsv) files.
2007-01-11 23:24:05 +00:00
3340b1b7ac
Added support for union/intersection selections
2007-01-11 13:07:54 +00:00
9274b044b7
Added read_ftsv in dataset.py. This method reads fluents tab separated values
...
files and returns a dataset.
2007-01-10 17:35:58 +00:00
6f050d4f10
Fixed error in docstring.
2007-01-08 19:31:19 +00:00
1371bc1b1a
Added function menu. Clicking the items still does not work, though.
2007-01-05 14:42:22 +00:00
f7fe171896
Added Optionsdialog for pca and pls
2007-01-04 13:53:47 +00:00
e08a8377ed
Added Options and OptionsDialog
2007-01-04 13:53:03 +00:00
ebd4fdae7b
Changed all places that load icons to do it through IconFactory.
2007-01-03 17:30:27 +00:00
57e58e3910
Renamed IconFactory.get_icon() -> IconFactory.get()
2007-01-03 13:46:39 +00:00
