e363f1cd7d
Signals for drag'n'drop added to new plots
2006-05-02 12:38:00 +00:00
4e4150236f
Drag'n'drop for plots
2006-05-02 11:09:55 +00:00
a2d3a9d5cc
Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input.
2006-04-28 11:44:55 +00:00
fa3b1182bc
Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py)
2006-04-27 15:51:25 +00:00
8fd1f4ba83
Renamed module for affy workflow.
2006-04-27 15:06:01 +00:00
5bb93af6f0
Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model.
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The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
2006-04-27 14:38:48 +00:00
c6ef6cdb07
Added auto-expand and auto-commit
2006-04-27 14:15:13 +00:00
0df56248ee
Removed obsolete module annotations.
2006-04-27 12:41:51 +00:00
fe0cf736f5
Created affy workflow.
2006-04-27 12:15:30 +00:00
06805aa5e4
Changed colormap for LinePlot.
2006-04-27 12:05:20 +00:00
3683f6c2e9
Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot.
2006-04-27 11:38:40 +00:00
60c1d19a74
Get correct path for glade file based on the path of the system package.
2006-04-27 11:20:12 +00:00
969006015a
Added LinePlot used by Affy importer.
2006-04-27 11:03:11 +00:00
c95c18eb14
fluents.glade is now read from '/system/' under the directory of argv[0].
2006-04-27 10:54:18 +00:00
959d114774
Changed from using default python version to python2.4 to make the
...
program work on debian systems. The program does not currently support
python 2.3, and probably never will because of the set class that is a built-in
only from python 2.4 and up.
2006-04-27 10:06:30 +00:00
a92be02e80
Added help index and bug report menu options.
2006-04-27 09:55:19 +00:00
2b0fdc186c
Fiexd the cancel button of the new project dialog. Closes #7
2006-04-26 14:01:46 +00:00
a0ad4bdf54
Fixed logger bugs. Closes #6
2006-04-26 13:29:10 +00:00
a9947daf14
Removed debug print statements.
2006-04-26 12:57:00 +00:00
21edeecdc3
Add toolbar support to plots, with home made selection support <phew>.
2006-04-26 12:11:23 +00:00
490038d9bf
Refreshing workflows now works.
2006-04-25 18:06:21 +00:00
3e5be133ad
Fixed the fluents -l bug.
2006-04-25 12:36:38 +00:00
251f9d6cf4
Added command line options to create a new project based on a given workflow.
2006-04-25 12:19:25 +00:00
16820cf29e
The refresh button in the toolbar reloads the currently active workflow module.
2006-04-25 10:46:06 +00:00
9d7a5ba769
Optimized plot selection.
2006-04-25 10:08:12 +00:00
359903c5ab
Made system a package.
2006-04-25 09:53:35 +00:00
32fdca837a
Moved the generation of workflow list from dialogs.py to workflow.py, as
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a step in the process of making command line options to the program.
2006-04-24 21:52:18 +00:00
cfbb76f25a
import * removed
2006-04-24 16:05:54 +00:00
ba2a769f01
Function names are now folders in the navigator.
2006-04-24 15:20:27 +00:00
179a2f88a9
The navigator now displays the plots and data in a tree that shows the ancestry information.
2006-04-24 14:52:21 +00:00
6c72dec7fa
Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it.
2006-04-24 14:42:45 +00:00
b807f27874
Fixed deselection in scatterplot.
2006-04-24 14:28:30 +00:00
3fb7d06f4e
Fixed problem with plots accumulating.
2006-04-24 14:25:24 +00:00
97e09b39a1
Added matrix-getter to Dataset.
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Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
2006-04-24 14:07:34 +00:00
cebf801cf6
bugix on creation of output data (E) from pca
2006-04-24 12:51:43 +00:00
2bddb22867
Fixed navigator after changes in Dataset.
2006-04-24 11:39:11 +00:00
6356e2ebd6
get_dim_names and get_identifiers added in dataset
2006-04-24 11:23:30 +00:00
a2e4392a72
Complete rewrite of dataset class, with (all) the necessary updates
2006-04-24 09:53:07 +00:00
53d0228074
* Added the full text of the GNU GPL.
2006-04-22 22:46:10 +00:00
e762aef882
* system/dialogs.py: Oooops. Forgot this file in the previous commits. Well,
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here it is, currently only with the New Project dialog.
2006-04-22 22:29:02 +00:00
2da88a5128
* Fixed a couple of menu items.
2006-04-22 21:56:30 +00:00
f484ec9945
* workflows/go_workflow.py: Added a workflow name to make it identifiable
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in the "create project" druid.
2006-04-22 21:48:30 +00:00
efcdafe843
* The New project toolbar button now works. A druid will display the
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available workflows and ask you to select one of them. There are still
a couple of unresolved issues, but it works, so i upload it to ease
the use of the program.
2006-04-22 21:46:44 +00:00
357cd1a1a6
Removed workflow being dependent on rpy by putting the import within the run function of affymatrix import.
2006-04-22 20:48:44 +00:00
26f16acc9c
Made sure pickling use protocol 2 to make it faster and the files smaller (binary).
2006-04-22 18:11:31 +00:00
553bfbe1ae
Big cleanup of affymatrix importer. Now use E@exprs to get matrix from loaded data.
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Also made row and colname import better by ensuring vector-handling, ensuring that getting single column/row data works without being converted into a single string instead of string in a list.
Removed ;1-hack and use NO_CONVERSION to ensure no extra computation is done when calculating r stuff.
Now AffyMatrix data is named as such.
2006-04-22 17:59:15 +00:00
d26dd54f5b
Label verifier bugged when having generated labels.
2006-04-22 17:30:10 +00:00
5a2a1afe91
Added pickling as a quick and dirty way of loading and saving data in einars workflow.
2006-04-22 16:27:33 +00:00
d123f0e1c1
Added doc-string for CelFileImportFunction.
2006-04-22 15:59:19 +00:00
e151e66898
Let log windows always follow changes/new entries.
2006-04-22 15:41:08 +00:00
