Einar Ryeng
7693f336ba
Added a singleton project in the project module, so that the current project is
...
easily accessible from anywhere in the code. As there is only one project at
any given time this should not be a problem.
The Gene Ontology browser needed this to be able to set the selection without
passing the current project through several constructors.
Added a context menu in the GO browser that allows the user to select all GO
terms in the subgraph that starts on the current node.
2007-01-18 15:45:48 +00:00
Arnar Flatberg
f533344242
Added histogram in plot menu
2007-01-17 15:40:54 +00:00
Arnar Flatberg
7c20e6d780
Added simple histogram
2007-01-17 15:40:33 +00:00
Einar Ryeng
1ffbf4f9e7
Added default implementation of set_current_selection in Plot, so that plots can safely
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ignore selections without adding any code to the plot.
Rectangle select mode, lasso select mode and freeze are now grayed out in ImagePlot.
2007-01-17 15:35:12 +00:00
Einar Ryeng
06591e301e
Added "Plot" submenu in navigator context menu. Can create an ImagePlot of a dataset.
2007-01-17 14:06:07 +00:00
Einar Ryeng
c3c6e85044
Added ImagePlot, which displays a dataset as an image.
2007-01-17 13:20:04 +00:00
Einar Ryeng
33c51505c4
Fixed the dataset loading so that it returns a correctly named Dataset.
2007-01-16 12:41:29 +00:00
Einar Ryeng
f612dda72f
Fixed bug in ftsv save and open dialogs. The save dialog now looks as intended.
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Added the possibility to load several datasets at once. Error handling should still
be improved.
2007-01-16 12:28:56 +00:00
Arnar Flatberg
ea4c0af6de
fixed shift/control on lasso
2007-01-15 15:46:24 +00:00
Einar Ryeng
cacb0a27b7
Added "Save dataset" option to navigator context menu.
2007-01-15 13:58:56 +00:00
Arnar Flatberg
476c830a5e
lasso
2007-01-15 13:47:47 +00:00
Arnar Flatberg
0a38cb7d4a
added lasso
2007-01-15 13:47:18 +00:00
Einar Ryeng
ee447b688c
Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
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adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
Einar Ryeng
58886726d8
Small updates.
2007-01-12 10:50:55 +00:00
Einar Ryeng
ae3aa7e4aa
Create Resnik distances and save them as ftsv.
2007-01-12 00:00:56 +00:00
Einar Ryeng
08b7d8dd85
Added function to save fluents tab separated values (ftsv) files.
2007-01-11 23:24:05 +00:00
Einar Ryeng
e4d7f8e5a2
Resnik distances between GO terms work now.
2007-01-11 22:01:31 +00:00
Einar Ryeng
4b1d16ea78
Updated go-workflow.
2007-01-11 18:57:45 +00:00
Arnar Flatberg
3340b1b7ac
Added support for union/intersection selections
2007-01-11 13:07:54 +00:00
Einar Ryeng
d4f5a92010
Fixed typo.
2007-01-11 13:07:03 +00:00
Einar Ryeng
9274b044b7
Added read_ftsv in dataset.py. This method reads fluents tab separated values
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files and returns a dataset.
2007-01-10 17:35:58 +00:00
Einar Ryeng
060732d980
More persumably non-working stuff.
2007-01-10 15:33:19 +00:00
Arnar Flatberg
1e0b99f283
small bugfix
2007-01-09 08:53:28 +00:00
Einar Ryeng
fa047e0171
Committing non-working code that breaks go workflow. ;)
2007-01-08 21:13:22 +00:00
Einar Ryeng
6f050d4f10
Fixed error in docstring.
2007-01-08 19:31:19 +00:00
Einar Ryeng
1371bc1b1a
Added function menu. Clicking the items still does not work, though.
2007-01-05 14:42:22 +00:00
Arnar Flatberg
f7fe171896
Added Optionsdialog for pca and pls
2007-01-04 13:53:47 +00:00
Arnar Flatberg
e08a8377ed
Added Options and OptionsDialog
2007-01-04 13:53:03 +00:00
Einar Ryeng
ebd4fdae7b
Changed all places that load icons to do it through IconFactory.
2007-01-03 17:30:27 +00:00
Einar Ryeng
57e58e3910
Renamed IconFactory.get_icon() -> IconFactory.get()
2007-01-03 13:46:39 +00:00
Einar Ryeng
d45ae4f480
Added icon factory to ensure that all icons are loaded exactly once. This also
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cleans up code and saves X pixmap memory.
2007-01-03 13:34:40 +00:00
Einar Ryeng
75447d8840
Fixed function output bug. Datasets now appear as children of their first parent, also in gtk 2.10
2007-01-03 13:05:37 +00:00
Arnar Flatberg
c34f23190b
init
2007-01-02 15:10:59 +00:00
Arnar Flatberg
3ef5522dd0
First import of chemometrics utils
2006-12-18 11:59:12 +00:00
Einar Ryeng
fac9346aad
Added very hackish annotation count reader.
2006-12-15 12:53:27 +00:00
Arnar Flatberg
6aa1a1a817
Code upgraded to adjust for new version of networkx
2006-11-24 13:29:09 +00:00
Einar Ryeng
880509f8a9
Removed whitespace that broke plots.
2006-10-31 14:35:12 +00:00
Einar Ryeng
fb77ddb549
Updated GO workflow. Options class test added. Reading the ontology takes too
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long.
2006-10-26 16:51:42 +00:00
Arnar Flatberg
438dbd358b
Dataset to colour of dragndrop in dataset + minor addjustments in networkplot
2006-10-25 12:56:21 +00:00
Einar Ryeng
0b30aeac6f
Updated GO workflow.
2006-10-22 23:19:54 +00:00
Einar Ryeng
5491f5ce04
GO workflow. Does not work.
2006-10-22 15:31:36 +00:00
Arnar Flatberg
de4a65e7b3
Added the svg format icon for move
2006-10-18 12:47:01 +00:00
Einar Ryeng
cdb8d1b026
Removed unit test for workflows. The only test file in the directory is
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for a workflow that is not used.
2006-10-17 17:53:52 +00:00
Einar Ryeng
1f9a400057
Added docstrings.
2006-10-17 17:50:42 +00:00
Einar Ryeng
f7ededa451
Removed executable bit.
2006-10-17 17:50:18 +00:00
Einar Ryeng
fe96772319
Expanded some documentation.
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Added clean target to doc Makefile.
2006-10-17 17:18:46 +00:00
Einar Ryeng
5d4700da20
Removed some example rubbish that was placed after the GPL and had gotten
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inside the file due to sloppy cut-n-paste.
2006-10-17 17:17:50 +00:00
Einar Ryeng
fb3d9f2050
Added documentation directory with a Makefile to generate source code
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documentation. This adds python-epydoc as a build dependency.
2006-10-17 15:06:24 +00:00
Einar Ryeng
4153f06c60
Added start-up script that sets PYTHONPATH and starts fluents.
2006-10-17 14:43:57 +00:00
Einar Ryeng
375d45e0cc
Updated import statements, and removed the workflows pca_workflow and
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affy_workflow.
2006-10-17 14:42:27 +00:00
Einar Ryeng
Arnar Flatberg