Commit Graph

480 Commits

Author SHA1 Message Date
ee447b688c Added context menu to NavigatorView that allows reading FTSV datasets directly, i.e. without
adding a function in the workflow for this.
2007-01-12 14:37:44 +00:00
58886726d8 Small updates. 2007-01-12 10:50:55 +00:00
ae3aa7e4aa Create Resnik distances and save them as ftsv. 2007-01-12 00:00:56 +00:00
08b7d8dd85 Added function to save fluents tab separated values (ftsv) files. 2007-01-11 23:24:05 +00:00
e4d7f8e5a2 Resnik distances between GO terms work now. 2007-01-11 22:01:31 +00:00
4b1d16ea78 Updated go-workflow. 2007-01-11 18:57:45 +00:00
3340b1b7ac Added support for union/intersection selections 2007-01-11 13:07:54 +00:00
d4f5a92010 Fixed typo. 2007-01-11 13:07:03 +00:00
9274b044b7 Added read_ftsv in dataset.py. This method reads fluents tab separated values
files and returns a dataset.
2007-01-10 17:35:58 +00:00
060732d980 More persumably non-working stuff. 2007-01-10 15:33:19 +00:00
1e0b99f283 small bugfix 2007-01-09 08:53:28 +00:00
fa047e0171 Committing non-working code that breaks go workflow. ;) 2007-01-08 21:13:22 +00:00
6f050d4f10 Fixed error in docstring. 2007-01-08 19:31:19 +00:00
1371bc1b1a Added function menu. Clicking the items still does not work, though. 2007-01-05 14:42:22 +00:00
f7fe171896 Added Optionsdialog for pca and pls 2007-01-04 13:53:47 +00:00
e08a8377ed Added Options and OptionsDialog 2007-01-04 13:53:03 +00:00
ebd4fdae7b Changed all places that load icons to do it through IconFactory. 2007-01-03 17:30:27 +00:00
57e58e3910 Renamed IconFactory.get_icon() -> IconFactory.get() 2007-01-03 13:46:39 +00:00
d45ae4f480 Added icon factory to ensure that all icons are loaded exactly once. This also
cleans up code and saves X pixmap memory.
2007-01-03 13:34:40 +00:00
75447d8840 Fixed function output bug. Datasets now appear as children of their first parent, also in gtk 2.10 2007-01-03 13:05:37 +00:00
c34f23190b init 2007-01-02 15:10:59 +00:00
3ef5522dd0 First import of chemometrics utils 2006-12-18 11:59:12 +00:00
fac9346aad Added very hackish annotation count reader. 2006-12-15 12:53:27 +00:00
6aa1a1a817 Code upgraded to adjust for new version of networkx 2006-11-24 13:29:09 +00:00
880509f8a9 Removed whitespace that broke plots. 2006-10-31 14:35:12 +00:00
fb77ddb549 Updated GO workflow. Options class test added. Reading the ontology takes too
long.
2006-10-26 16:51:42 +00:00
438dbd358b Dataset to colour of dragndrop in dataset + minor addjustments in networkplot 2006-10-25 12:56:21 +00:00
0b30aeac6f Updated GO workflow. 2006-10-22 23:19:54 +00:00
5491f5ce04 GO workflow. Does not work. 2006-10-22 15:31:36 +00:00
de4a65e7b3 Added the svg format icon for move 2006-10-18 12:47:01 +00:00
cdb8d1b026 Removed unit test for workflows. The only test file in the directory is
for a workflow that is not used.
2006-10-17 17:53:52 +00:00
1f9a400057 Added docstrings. 2006-10-17 17:50:42 +00:00
f7ededa451 Removed executable bit. 2006-10-17 17:50:18 +00:00
fe96772319 Expanded some documentation.
Added clean target to doc Makefile.
2006-10-17 17:18:46 +00:00
5d4700da20 Removed some example rubbish that was placed after the GPL and had gotten
inside the file due to sloppy cut-n-paste.
2006-10-17 17:17:50 +00:00
fb3d9f2050 Added documentation directory with a Makefile to generate source code
documentation. This adds python-epydoc as a build dependency.
2006-10-17 15:06:24 +00:00
4153f06c60 Added start-up script that sets PYTHONPATH and starts fluents. 2006-10-17 14:43:57 +00:00
375d45e0cc Updated import statements, and removed the workflows pca_workflow and
affy_workflow.
2006-10-17 14:42:27 +00:00
610812f265 Started to rename "system" package to "fluents". Repository will be broken
until this is completed.
2006-10-17 14:28:35 +00:00
c40f9a2947 Added a LineViewPlot in GenerateData 2006-10-17 13:59:31 +00:00
bf951990f5 Comments and cleanup in LineViewPlot 2006-10-17 13:58:33 +00:00
ba55678472 Added documentation strings and removed some unused code. 2006-10-17 12:33:30 +00:00
42f6fd7440 Yet another bugfix on the plot updates. View frames will now be updated from
the upper left corner, horizontally first.
2006-10-17 10:37:46 +00:00
4b8ff16bbf Another bug fix. Double-clicking function output works, also after changing table size. 2006-10-17 10:32:53 +00:00
eb203ea8ad Bugfix; keeping view if table size increases. 2006-10-17 10:06:27 +00:00
9162deabac Updated icon. 2006-10-16 20:16:50 +00:00
d9ec8f1611 Small code cleanup. Removed some lines of code that were commented out. 2006-10-16 20:01:08 +00:00
eefbc438bc The application is now a singleton. Added button to choose numer of
plots.
2006-10-16 19:57:40 +00:00
ebdf6d4aba Updated icons 2006-10-14 17:17:23 +00:00
16036e5b52 Removed text labels from toolbar. 2006-10-14 15:31:38 +00:00