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581cef75ae
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Fixed plot things. A plot can only be attached to one view now.
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2006-05-29 11:24:33 +00:00 |
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62c1d79dac
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Fixed large/small plot bug by adding ViewFrames that contains plots.
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2006-05-22 21:43:24 +00:00 |
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5b1af849dc
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Implemented Limma function for Affy workflow.
Extended ScatterPlot to take two datasets and updated code using it.
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2006-05-09 13:17:17 +00:00 |
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033d4d5333
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removed reorderability
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2006-05-09 13:00:16 +00:00 |
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184a49ef9a
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fixed ordering of multiple selected datasets
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2006-05-09 12:22:50 +00:00 |
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0db25f1dd7
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Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it.
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2006-05-05 14:43:53 +00:00 |
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97f56f66ac
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Added text-input for contrast-matrix creator for affymetrics workflow.
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2006-05-05 14:30:23 +00:00 |
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98445498b5
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If argument 'selection' exists in function.run, pass current selection to it.
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2006-05-05 13:10:54 +00:00 |
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aa3a9ab619
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Added automagic argument checking when running functions.
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2006-05-05 10:10:03 +00:00 |
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9f7ee74189
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Replaced function as button-attribute with lambda as button click handler.
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2006-05-04 15:32:59 +00:00 |
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338778d7b1
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Functions which doesn't require inputs will now run with data selected
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2006-05-03 14:47:55 +00:00 |
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b757da5929
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Implemented PhenotypeDataset with tests.
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2006-05-03 14:04:28 +00:00 |
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56a6028547
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Validation on number of inputs added
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2006-05-03 11:52:54 +00:00 |
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a613f0a3fa
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Made scatter use the new methods for index/identifier-conversion.
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2006-05-03 11:40:12 +00:00 |
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5b2223afcd
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Multiselection included. (Without input validation).
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2006-05-03 11:11:45 +00:00 |
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91c1d8ea8b
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Fixed getting empty selections.
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2006-05-02 15:40:54 +00:00 |
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56c07c6392
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Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof.
Also added tests.
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2006-05-02 14:06:48 +00:00 |
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2db1fc774e
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Removed whitespace.
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2006-05-02 13:14:07 +00:00 |
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e363f1cd7d
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Signals for drag'n'drop added to new plots
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2006-05-02 12:38:00 +00:00 |
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4e4150236f
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Drag'n'drop for plots
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2006-05-02 11:09:55 +00:00 |
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a2d3a9d5cc
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Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input.
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2006-04-28 11:44:55 +00:00 |
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fa3b1182bc
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Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py)
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2006-04-27 15:51:25 +00:00 |
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5bb93af6f0
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Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model.
The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
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2006-04-27 14:38:48 +00:00 |
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c6ef6cdb07
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Added auto-expand and auto-commit
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2006-04-27 14:15:13 +00:00 |
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0df56248ee
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Removed obsolete module annotations.
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2006-04-27 12:41:51 +00:00 |
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06805aa5e4
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Changed colormap for LinePlot.
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2006-04-27 12:05:20 +00:00 |
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3683f6c2e9
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Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot.
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2006-04-27 11:38:40 +00:00 |
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60c1d19a74
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Get correct path for glade file based on the path of the system package.
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2006-04-27 11:20:12 +00:00 |
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969006015a
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Added LinePlot used by Affy importer.
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2006-04-27 11:03:11 +00:00 |
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c95c18eb14
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fluents.glade is now read from '/system/' under the directory of argv[0].
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2006-04-27 10:54:18 +00:00 |
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a92be02e80
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Added help index and bug report menu options.
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2006-04-27 09:55:19 +00:00 |
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2b0fdc186c
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Fiexd the cancel button of the new project dialog. Closes #7
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2006-04-26 14:01:46 +00:00 |
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a0ad4bdf54
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Fixed logger bugs. Closes #6
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2006-04-26 13:29:10 +00:00 |
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a9947daf14
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Removed debug print statements.
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2006-04-26 12:57:00 +00:00 |
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21edeecdc3
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Add toolbar support to plots, with home made selection support <phew>.
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2006-04-26 12:11:23 +00:00 |
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490038d9bf
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Refreshing workflows now works.
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2006-04-25 18:06:21 +00:00 |
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251f9d6cf4
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Added command line options to create a new project based on a given workflow.
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2006-04-25 12:19:25 +00:00 |
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16820cf29e
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The refresh button in the toolbar reloads the currently active workflow module.
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2006-04-25 10:46:06 +00:00 |
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9d7a5ba769
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Optimized plot selection.
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2006-04-25 10:08:12 +00:00 |
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359903c5ab
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Made system a package.
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2006-04-25 09:53:35 +00:00 |
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32fdca837a
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Moved the generation of workflow list from dialogs.py to workflow.py, as
a step in the process of making command line options to the program.
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2006-04-24 21:52:18 +00:00 |
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ba2a769f01
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Function names are now folders in the navigator.
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2006-04-24 15:20:27 +00:00 |
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179a2f88a9
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The navigator now displays the plots and data in a tree that shows the ancestry information.
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2006-04-24 14:52:21 +00:00 |
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6c72dec7fa
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Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it.
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2006-04-24 14:42:45 +00:00 |
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b807f27874
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Fixed deselection in scatterplot.
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2006-04-24 14:28:30 +00:00 |
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3fb7d06f4e
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Fixed problem with plots accumulating.
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2006-04-24 14:25:24 +00:00 |
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97e09b39a1
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Added matrix-getter to Dataset.
Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
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2006-04-24 14:07:34 +00:00 |
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2bddb22867
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Fixed navigator after changes in Dataset.
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2006-04-24 11:39:11 +00:00 |
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6356e2ebd6
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get_dim_names and get_identifiers added in dataset
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2006-04-24 11:23:30 +00:00 |
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a2e4392a72
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Complete rewrite of dataset class, with (all) the necessary updates
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2006-04-24 09:53:07 +00:00 |
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