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15 Commits

Author SHA1 Message Date
Einar Ryeng 04b7cbb872 Lots of changes in structure to make it possible to package the program while
still allowing workflows to be placed in several locations in the file system.

The installation procedure is now ./configure && make install configure will
run m4 on fluents/paths.py.m4, Makefile.m4 and doc/Makefile.m4 so that the
installation system and the program will know where some important directories
are located.

The paths.py.m4 and consequently also pahts.py files are just listings of
directories configured during install.  I did this to separate these from all
other files so that as little as possible is touched by m4. It is still
necessary to do an install now to get the program to run in a clean checkout.

Workflows can now be placed anywhere in the system. This is done by setting the
workflowdir variable in the configuration file. All workflow directories,
separated by semicolons, are added to the python path.

The use of setup.py is now deprecated.
2008-12-05 00:12:49 +00:00
Einar Ryeng a380093afc Added workflowdir to configuration file. workflowdir is a semicolon separated
path of directories where workflows can be found.
2008-02-07 14:20:52 +00:00
Einar Ryeng c862c8bb04 Added function to specify a specific workflow based on module name. 2007-12-11 11:40:27 +00:00
Einar Ryeng 1a4d73f26b Fixed the function menu. It now works, is placed before "Help", and the method
for running a function is moved to the workflow module instead of being hidden the
WorkflowView.
2007-12-10 16:57:38 +00:00
Einar Ryeng a45743c31e Added main.py that now contains the One & Only Singleton instance of these classes:
- Navigator
 - Aplication
 - Workflow
 - Project
 - Options
Corresponding changes have been added in lots of other files to account for this, but
the access to these objects should now be a lot easier.
2007-07-26 12:35:59 +00:00
Einar Ryeng d29013a863 T-test now works, and outputs a histogram as well as t-values and p-values. 2007-07-03 16:25:38 +00:00
Einar Ryeng 4eaea2fe59 Added empty lists as default values for all_data and all_plots in Options, so
that subclasses of Options will work with the GUI without modifications.
2007-06-28 21:33:09 +00:00
Einar Ryeng 89636962a7 Added Workflow.get_data_file_name() which returns the full path to a given
data file, or None if the file does not exist. This is tested in the test
workflow.
2007-02-28 14:56:24 +00:00
Arnar Flatberg 78183df0e9 Alignment of function boxes 2007-02-27 18:14:58 +00:00
Arnar Flatberg 7a204a3426 Added option page to option dialog 2007-01-25 12:10:18 +00:00
Einar Ryeng 6f050d4f10 Fixed error in docstring. 2007-01-08 19:31:19 +00:00
Einar Ryeng 1371bc1b1a Added function menu. Clicking the items still does not work, though. 2007-01-05 14:42:22 +00:00
Arnar Flatberg e08a8377ed Added Options and OptionsDialog 2007-01-04 13:53:03 +00:00
Einar Ryeng 375d45e0cc Updated import statements, and removed the workflows pca_workflow and
affy_workflow.
2006-10-17 14:42:27 +00:00
Einar Ryeng 610812f265 Started to rename "system" package to "fluents". Repository will be broken
until this is completed.
2006-10-17 14:28:35 +00:00